Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00612 ATGGGTGATGACAATATTAATCAAATGGGAAGTACTAGTTCATCATCAATGATGAATAATTGTGAGATTATTGATTGGGATGGGCTATTTTCTAGTTCTTGTTTGAGTAATAATTTGGAGATGGTAGAGAAGGGAATTTGTGGAAGTGATCAGGATGATAATAATTATTATCCAATGGGAGATAATAATAATAATGTTGTTATTGGAGGAGTAAAAGAGGGTGATATTATTATTGGTGGAGGGCATAATAACAACAACAACAACAACAATTGTAAGTATAAAGGGAAAATGGTGATGGGTAAAAGAAGTACAATAGCTTCTCCAAGAATTGCTTTTCAAACAAAAAGTGTTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCAACCATCCTAGGAGCTATTACAGGTGTACACATCACACATGCAATGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACTATAGTGGTTACAACATATGAAGGGATTCACAATCATCCATCTGAGAAATTAATGGAAACTCTAACCCCTCTTCTCAAGCAATTGCAATTCCTTTCAGGCATTTAG 603 34.83 MGDDNINQMGSTSSSSMMNNCEIIDWDGLFSSSCLSNNLEMVEKGICGSDQDDNNYYPMGDNNNNVVIGGVKEGDIIIGGGHNNNNNNNNCKYKGKMVMGKRSTIASPRIAFQTKSVEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4045602 4047366 + CsaV3_4G006120.1 Csa04g00612 526222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00612 200 ProSiteProfiles WRKY domain profile. 116 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00612 200 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 196 IPR044810 GO:0003700
Csa04g00612 200 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 14 196 - -
Csa04g00612 200 Pfam WRKY DNA -binding domain 122 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00612 200 SUPERFAMILY WRKY DNA-binding domain 116 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00612 200 SMART WRKY_cls 121 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00612 200 Gene3D WRKY domain 106 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00612 Csa-Chr4:4045602 Csa07g01922 Csa-Chr7:19053279 2.11E-33 dispersed
Csa03g02485 Csa-Chr3:23279533 Csa04g00612 Csa-Chr4:4045602 2.51E-37 transposed
Csa04g00303 Csa-Chr4:1881152 Csa04g00612 Csa-Chr4:4045602 1.83E-37 transposed
Csa03g00858 Csa-Chr3:7219640 Csa04g00612 Csa-Chr4:4045602 1.82E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31511 PF03106 WRKY 8.20E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00612 - - csv:101221558 358.221