Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00615 ATGCTCTTCTTCAAATCTTCATCCGGAGCAGTGCACCAAGAATCCCAGCTGCCCCCGGAGGAGCTCAAGGAAACCTGCGCCGTTTCTGGCTCACCTGTCTCACTGACGGTGTGGAGGAAGTCACTCCTACTCTCCTGCAACGGCTTCACAGTGATCGATCGTAACGGAAACATCGTATACAGAGTCGACAATTACACCGGACGACCAGAGGAAATGATTCTGATGGACGGCCTCGGAAAATCCGTCCTCACAATGTGCCGTTCCAAGAAGCTAGGATTAGGGGAAAACTGGTGCGTATACGAAGGGGAAGTAGAAGGAAAAACTAAGGGAAGAAAGAACAAACCAATATGTCGAGTGAAGAAGAACATAAACATACTACATGTGGATCCGAATAGGAAAGTACTAGCGCATGTATACGATTACAGAATATCGAAGAAGAAGTACGCGTATAGCGTGGAAGGTTCATACGGAGAGCGATCGTGCAAGGTATTGGATGGTGCGTCGAGGAGAGTGGTGGCGGAGGTGAGGAGGAAGGAGGCGGTGAAGGGCGGGGTTTGTTTTGGGGGGGAGGTATTCGTTCTGGTGATTGTTCCTGGTTTTGATTGTGGATTAGCGATGGCTTTGGTTTTACTTTTGGATCAAATGTTCTCTTAG 654 48.78 MLFFKSSSGAVHQESQLPPEELKETCAVSGSPVSLTVWRKSLLLSCNGFTVIDRNGNIVYRVDNYTGRPEEMILMDGLGKSVLTMCRSKKLGLGENWCVYEGEVEGKTKGRKNKPICRVKKNINILHVDPNRKVLAHVYDYRISKKKYAYSVEGSYGERSCKVLDGASRRVVAEVRRKEAVKGGVCFGGEVFVLVIVPGFDCGLAMALVLLLDQMFS* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4069326 4070699 - CsaV3_4G006150.1 Csa04g00615 526225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00615 217 PANTHER - 20 216 IPR007612 -
Csa04g00615 217 Pfam LURP-one-related 28 210 IPR007612 -
Csa04g00615 217 SUPERFAMILY Tubby C-terminal domain-like 28 216 IPR025659 -
Csa04g00615 217 Gene3D - 26 217 IPR038595 -
Csa04g00615 217 PANTHER PROTEIN LURP-ONE-RELATED 17 20 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00615 - - - csv:101213452 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02989 Csa-Chr3:28495886 Csa04g00615 Csa-Chr4:4069326 6.45E-45 dispersed
Csa04g00615 Csa-Chr4:4069326 Csa05g00300 Csa-Chr5:1889345 7.24E-19 dispersed
Csa04g00615 Csa-Chr4:4069326 Csa07g02145 Csa-Chr7:20465378 6.79E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g52 . . . . . . . Bma14g00595 . Cmo16g00627 . . . . . Cpe14g00489 . . . . . . . . Cla07g00743 Cam07g0795 Cec07g0861 Cco07g0830 Clacu07g0776 Cmu07g0783 Cre07g1135 . . Cone6ag0816 Cone9ag0816 . . . Cme07g01610 . . . . . . . . . . . . Cma16g00578 . . . . . . . . . . . . . . . . . . . Csa04g00615 Chy07g01196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009392 0 1 0 3 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00615 Csa_Chr04 FPKM 1.050085 1.161821 0.85116 0.903417 0.744312 0.794243 0.87708 0.880826 0.795419 0.635277