Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00618 ATGGAAAGCTTCAGCTTGCTCAAATATTGGAGAGGTGGCGGCGGCACCGGTGCTACTGCCGCCGCTGATTTTGCTTTTAATAGCAACTCTTCTACTTCTGCCACAGCTACTGTTGTCACTGCTGTTCCGCGGAAAGAGGTGGATACGGATGAGGAGGAGAATGATAGTGATGATGGACCGTTTTTTGATTTGGAGTTTGCTGTTCCTGACGAGGACGAGGGTCGAAAACAGGGAAGAAACTGTATTGATGGAAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGATGATGATGATGATGATGAAGAAGATGAAGATGGAGATGGGGATGAGAGAGAGTTTAACTTCACGCTCTCATCTGGCTCTAGCAATGAACATTCCGATGCCAATCTCACGTTTTCTCCTTCTGATGACTTGTTTTTCAAAGGAAAGCTTGTTCCAGTTGAAGCTTCCTCCAACGGCGGTTCTGAACCAAACGTCAGGCCGCAACTTCGTGTCACATTGTTGAAATCAGCAGCTAAGTTTAGGGTCTTCATGTCGGGGTTGAAGAAATCGAAATCCAACGTGGAAAAGAAAACAGAGACGGATGGATCTGTTGAAGAGACGGCTAAAAGTGAGACAAAAGAAGAGACGACGGAAAACCCATTGGTGATAAACGAAAACCAACCGGAAAAAGATCAGAATCAGGCTAAAAATAAGTTTTTTGCTGTGAAATTTAAGGTCGAGGAAGTTCCGATCATGTCTCTGTTTACTAGAGACAACAGTTCAAGAGGGTCCGGAGTAACAACCAACAACAAACCCCAGAAACAAACCTCCGATGAATCAACTCCGGAGGAAAATCGTTTCTCAAAAGACGTATTAATGCAAAAGTACTTGAAGATGGTGAAGCCTCTGTACATTCGGGTTTCAAGAAGATACGGCGAGAAGTTCAAACTATCCGGACAGCTTATTTTGGGTGCAGCTGGAGCCAAGTCAAGTGCGCCGCCGTCTATAGCGGCGCCACCCACCTCCCCGTCGGCGGAGAAGTCCCTGGTAGAGACAGAAGCTGTCCAAGTGAAACCACCAACGACTACGACCAACAACAGCAAAGGCAGGAACATGCCAGCCAAGCTAAGAGTGGTTTGTAAGCATTTGGGAAAAAGTCGGTCAGCTTCCTCCGCCGTAGCGGCGGCGCCACCGGGGGTAGCACCGTCGAGAAGAGACGATTCGCTTCTGCAGCAACAAGACGGAATCCAAAGCGCCATTCTCCATTGCAAGAGATCCTTCAACGCTTCTCGAGGTTCAGAGTCTTCCTTATTATCAAGGTCAGTAAGCGACACTCTGCGTGAGAAACCTTCAGATTTAACAGAAAAAGCCATTGGTTGA 1365 46.89 MESFSLLKYWRGGGGTGATAAADFAFNSNSSTSATATVVTAVPRKEVDTDEEENDSDDGPFFDLEFAVPDEDEGRKQGRNCIDGSEEEEEEEEENDDDDDDEEDEDGDGDEREFNFTLSSGSSNEHSDANLTFSPSDDLFFKGKLVPVEASSNGGSEPNVRPQLRVTLLKSAAKFRVFMSGLKKSKSNVEKKTETDGSVEETAKSETKEETTENPLVINENQPEKDQNQAKNKFFAVKFKVEEVPIMSLFTRDNSSRGSGVTTNNKPQKQTSDESTPEENRFSKDVLMQKYLKMVKPLYIRVSRRYGEKFKLSGQLILGAAGAKSSAPPSIAAPPTSPSAEKSLVETEAVQVKPPTTTTNNSKGRNMPAKLRVVCKHLGKSRSASSAVAAAPPGVAPSRRDDSLLQQQDGIQSAILHCKRSFNASRGSESSLLSRSVSDTLREKPSDLTEKAIG* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4089954 4094047 - CsaV3_4G006180.1 Csa04g00618 526228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00618 454 MobiDBLite consensus disorder prediction 42 138 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 184 229 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 336 366 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 50 67 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 185 213 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 250 271 - -
Csa04g00618 454 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 2-RELATED 1 448 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 384 409 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 115 134 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 323 366 - -
Csa04g00618 454 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 2-RELATED 1 448 IPR039619 GO:0005886
Csa04g00618 454 MobiDBLite consensus disorder prediction 68 83 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 84 111 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 250 282 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 423 439 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 214 229 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 423 454 - -
Csa04g00618 454 MobiDBLite consensus disorder prediction 440 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00618 - - - csv:101222734 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01762 Csa-Chr3:13193382 Csa04g00618 Csa-Chr4:4089954 7.68E-22 dispersed
Csa04g00618 Csa-Chr4:4089954 Csa05g00098 Csa-Chr5:490886 5.07E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g55 Blo02g01125 Blo03g00230 Bda06g00124 Bda08g00500 Bpe05g00664 Bpe07g00091 . . . Cmo16g00625 . . . . . Cpe14g00487 Cpe05g00634 . . . . . . . Cla07g00738 Cam07g0791 Cec07g0856 Cco07g0826 Clacu07g0772 Cmu07g0781 Cre07g1132 . . Cone14ag0046 . . . . Cme07g01608 . . Bda07g01911 . . . Bma05g00838 Bma12g00061 . Cmo02g01105 . . Cma16g00576 . . . . . . . . . . . . . . . . . . . Csa04g00618 Chy07g01194 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005486 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00618 Csa_Chr04 FPKM 28.794508 30.668346 37.204041 35.955364 21.657564 22.083384 21.993917 39.798103 39.311546 39.751568