Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00619 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTGGGAGTCGGAGTTGGGGTAGGGCTCGGACTAGCCACCGGACAAAGCGTGAAGCAATGGTCCACCTCTCATTCATCAAATCTAATCACCGCTGATAAATTGGAACAGGAAATGCTTAAACACATTGTTGATGGCCGTGAAAGCAAAGTCACTTTTGATGATTTCCCTTATTATCTCAGTGAACAAACACGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTTTCTAAGTTCACTCGAAACCTTTCTCCAGCGAGTCGAGCCATCTTACTCTCCGGACCTGCTGAACTCTACCAGCAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAGGCTAAACTATTGCTTTTAGATATAACTGACTTTTCTCTAAAGATTCAGAGCAAATATGGTACTTCAGTCAAGGAATCTTGTTTTAAAAGGTCTACTTCAGAGTCAACATTGGAGAGATTATCTGGCTTATTTGGATCATTTTCAATGCTTCCATCCAGGGAAGACCAAAAAATAGGTTCATTGCGAAGGCAACGTAGTGGTGTGGAACTTGCATCGTGGGGAAACGAAGGATCTTCCGTTCTTCCAAAACTTCGAAGAAATGCCTCGGCTGCTGCTAACATTAATAACCTTGCTTCACAATGCAATGTTGACAAATCGGCTTCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTGTGCAGTCTTTGTATAAGGTTCTTCTATACGTGTCGAAAGCAAATCCCATTGTTTTATATCTTCGTGATGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATAACTTGTTCCATAAAATGCTACAAAAATTGTCTGGATCAATTTTGATTCTTGGTTCGCGTACTATCGATTCGAGCAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATCGAGATTAGACCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGTCGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGATAATGATCTTGACTGCGACGATCTCGATTCGATCTGTGTTGGTGATACCTTGGCTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAATAGCAAGGACGCTGAATACAGAAACGGAAAACTGATTATTTCGAGCAAGAGTTTGTCCCATGGACTGGGCATATTCCAGGCAGGAAAATCCACTAGCAAAAATAGTGTACAGCTTGAAGCACAAACTGGAGCTTCAAAGGACTCGGGAGCAGTGAAATCTGAAGCAAAAGCTGATACCGCAGCTGCTGAAATCAGAAGTGAAACAGCACCTGTAGCTGCGGCAAAAATCGATGGAGAGACGGCTGCTCCAGCTGTAAAAGCCCCAGAAGTTCCACCAGATAACGAGTTTGAGAAACGCATTAGGCCAGAGGTCATACCTGCGAATGAGATTGGTGTTACATTTTCTGACATTGGTGCGATGGAGGAAATAAAAGATTCTCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCTGGAGCAAGCTTCATTAATGTATCAATGTCTACCATAACTTCCAAATGGTTTGGCGAAGACGAGAAGAATGTTCGGGCTTTATTCACACTGGCAGCTAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGGCAGCGAACAAGAGTCGGTGAGCATGAGGCAATGAGGAAGATAAAGAATGAGTTCATGGCTCATTGGGATGGACTCTTGACGAAGCCAGGGGAGCGTGTACTTGTTCTTGCAGCAACAAATAGGCCATTTGACCTCGATGAGGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGGTTGCCATCAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACAAGAAGGAGCTGGCCACAATGACAGAAGGGTATAGTGGAAGTGATCTCAAGAACTTCTGTATGACGGCTGCATATCGACCTGTTCGAGAACTAATACAGCAAGAAAGACTAAAGGATGTGGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGACAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCACTAAATATGGAGGATTTCAAACTAGCAAAGAATCAGGTTGCAGCAAGTTTTGCAGCAGAAGGAGCGATGATGAGTGAATTGAGGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTAACTTATTTCCTGTGA 2496 43.07 MEQKGLLLSALSVGVGVGVGLGLATGQSVKQWSTSHSSNLITADKLEQEMLKHIVDGRESKVTFDDFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESCFKRSTSESTLERLSGLFGSFSMLPSREDQKIGSLRRQRSGVELASWGNEGSSVLPKLRRNASAAANINNLASQCNVDKSASLKHMSSWAFEEKLLVQSLYKVLLYVSKANPIVLYLRDVDRFLSKSNRVYNLFHKMLQKLSGSILILGSRTIDSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKSIKVQDNRNHIMEVLSDNDLDCDDLDSICVGDTLALSNYIEEIVVSAISYHLMNSKDAEYRNGKLIISSKSLSHGLGIFQAGKSTSKNSVQLEAQTGASKDSGAVKSEAKADTAAAEIRSETAPVAAAKIDGETAAPAVKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILTTLLGKEKVEEGLDKKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDVEKKRRAAEGQNKTGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELRQWNELYGEGGSRKKQQLTYFL* 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4100956 4107788 - CsaV3_4G006190.1 Csa04g00619 526229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00619 831 CDD AAA 523 688 - -
Csa04g00619 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 756 IPR027417 -
Csa04g00619 831 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 831 - -
Csa04g00619 831 Gene3D - 689 793 - -
Csa04g00619 831 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 831 - -
Csa04g00619 831 SMART AAA_5 553 690 IPR003593 -
Csa04g00619 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 349 IPR027417 -
Csa04g00619 831 Pfam AAA+ lid domain 712 753 IPR041569 -
Csa04g00619 831 ProSitePatterns AAA-protein family signature. 660 679 IPR003960 GO:0005524|GO:0016887
Csa04g00619 831 Gene3D - 516 799 IPR027417 -
Csa04g00619 831 MobiDBLite consensus disorder prediction 753 774 - -
Csa04g00619 831 Pfam ATPase family associated with various cellular activities (AAA) 557 687 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00619 - - - csv:101213686 1564.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01706 Csa-Chr1:13438022 Csa04g00619 Csa-Chr4:4100956 9.90E-93 dispersed
Csa01g00959 Csa-Chr1:5941976 Csa04g00619 Csa-Chr4:4100956 2.90E-23 transposed
Csa03g01964 Csa-Chr3:15520035 Csa04g00619 Csa-Chr4:4100956 1.51E-85 transposed
Csa05g00037 Csa-Chr5:170762 Csa04g00619 Csa-Chr4:4100956 4.23E-86 transposed
Csa07g01824 Csa-Chr7:18428229 Csa04g00619 Csa-Chr4:4100956 1.17E-12 transposed
Csa07g01966 Csa-Chr7:19323482 Csa04g00619 Csa-Chr4:4100956 3.32E-10 transposed
Csa04g00619 Csa-Chr4:4100956 Csa05g00095 Csa-Chr5:471727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00619 Csa_Chr04 FPKM 10.213187 7.5822 0.405263 0.0 0.0 1.766432 0.0 0.0 0.0 0.0