Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00624 ATGGCTTTCTCAACAAAAAATTGTATTACTATCACTGTTTTGGCTTTGTTCTTATTCTCTTCTTCTTCATGCTCGGCCTTACCTATGGTGAAAAAGCAAAAACACAAGCCTTGTAAACAGTTGGTTCTCTACTTTCATGACGTTCTTTACAACGGAAAGAATGCCAAGAATGCAACTTCCGCCATCGTTGCAGCCCCAGAAGGTGCAAACTTAACCATTTTAGCACCACAGTTTCGCTTTGGAAACATAGTTGTTTTCGACGATCCCATTACTTTGGACAACAATCTTCACTCGAATCCGGTAGGTCGAGCTCAAGGGATGTACATTTATGACACGAAAAACACTTTCACGGTATGGCTTGCCTTTTCCTTTTCTCTAAACTACACGGCATATAAAGGTACCATCAACTTCGTTGGAGCTGACCCAATTCTGGTGAAAACTAGAGATATCTCTGTCGTCGGCGGCACGGGAGACTTTTTTATGCACCGTGGTGTTGCTACCATAATGACTGATGCTTTTGAAGGAGAAGATCGTTATGAAGCCGCCCTGCGTGCTACTCCAAAGCGTCCATCCAGGTTCAATATAAATAACTTCACAAGGATGCGCCAATGCTTCGGTTGCGCCAATGCTTTATTAACTCATCAGTTAAAACATCTTCGAATCACCAAGATGCAGCTGCTATTTAAAGATGATGCAAGAGTGAGAAGGCTCATAAGAGAACAGGGAGGGACACTTAACTTTCAACTTGCATCAACTCAAGCACCCCTTGGCTTTGATTAG 780 42.69 MAFSTKNCITITVLALFLFSSSSCSALPMVKKQKHKPCKQLVLYFHDVLYNGKNAKNATSAIVAAPEGANLTILAPQFRFGNIVVFDDPITLDNNLHSNPVGRAQGMYIYDTKNTFTVWLAFSFSLNYTAYKGTINFVGADPILVKTRDISVVGGTGDFFMHRGVATIMTDAFEGEDRYEAALRATPKRPSRFNINNFTRMRQCFGCANALLTHQLKHLRITKMQLLFKDDARVRRLIREQGGTLNFQLASTQAPLGFD* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4146573 4148757 - CsaV3_4G006240.1 Csa04g00624 526234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00624 259 Gene3D - 23 199 IPR044859 -
Csa04g00624 259 Pfam Dirigent-like protein 38 173 IPR004265 -
Csa04g00624 259 PANTHER DIRIGENT PROTEIN 14 176 - -
Csa04g00624 259 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Csa04g00624 259 PANTHER DIRIGENT PROTEIN 14 176 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00624 - - - csv:101214654 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00624 Csa-Chr4:4146573 Csa04g01343 Csa-Chr4:13699698 3.04E-16 dispersed
Csa04g00622 Csa-Chr4:4125975 Csa04g00624 Csa-Chr4:4146573 2.31E-72 proximal
Csa04g00624 Csa-Chr4:4146573 Csa04g00625 Csa-Chr4:4152141 1.47E-128 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g71 . Blo03g00233 Bda06g00130 . Bpe05g00670 Bpe07g00085 . Bma14g00622 . Cmo16g00622 . . . . . Cpe14g00484 . . . . . . . . Cla07g00729 Cam07g0783 Cec07g0848 Cco07g0819 Clacu07g0766 Cmu07g0773 Cre07g1125 . Cone12ag0269 . Cone9ag0824 . . . Cme07g01600 . . Bda07g00469 . . Bpe11g00646 . Bma12g00058 . . . . Cma16g00570 . . . . . . . . . . . . . . . . . . . Csa04g00624 Chy07g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001461 2 2 1 3 3 3 3 3 3 2 3 3 2 1 2 1 3 3 3 3 3 3 3 2 2 3 3 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00624 Csa_Chr04 FPKM 16.498436 20.08798 16.273483 16.126036 13.153724 11.749516 13.083139 12.267932 12.485131 13.373388