Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00626 ATGGCTTCAAACGCTACGGCAGTGACCTTATGTCCGACTCCTATGAAAGCAACGTCAAATGGCATTTTCCAAGGCGATAATCCTCTTGATTTCGCTCTCCCTCTTATCATTCTGCAGATATGTTTGGTAGTCGCACTTACTCGTGGGCTTGCTTTTCTTCTGAGGCCATTAAAACAGCCGCGAGTGATTGGAGAAATTATCGGAGGAATACTTCTAGGTCCATCAGCTCTTGGACGTAACAAGAACTTTCTTCATACGATATTTCCATCCAATAGTATCACATTGTTAGATACCATAGCAAACATTGGATTGTTATTCTTTCTCTTTCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACGGGAAAGAAGGCCTTTGGCATCGCTATAACTGGAATTTGTGTTCCCTTTGCATTAGGAATTGGATCATCATTTGTCCTCCGAGAAACCATATCCAAAGGTGTAAATGCTTCTGCGTTTCTCATATTCATGGGTGTTGCACTTTCAATAACAGCCTTTCCCGTCTTAGCTCGTATTCTTGCTGAGCTTAAACTACTGACGACTGATGTCGGCAGGATGGCTATGTCTGCTGCAGCAGTAAATGACGTAGCTGCCTGGATCCTCCTTGCTCTTGCTATTGCGTTATCGGGTTCTGATAAATCTCCCTTGACTGCAGTTTGGGTCTTTTTATCTGGCTGCGGCTTTGTGGTGGCTGCCATTGTCATTTTATCCCCTGTTTTCAAATGGATGACCAAACAATGTTTTCAAGGGGAGCCTGTACGGGAAATCTACATATGTGCCACATTAGCTATCGTCCTAGCTGCTGGATTTGCCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGAGTATTAGTTCCAAAGGATGGACCATTAGTAGGTGCTTTGGTAGAAAAAATAGAGGATCTTGTTTCTAGTCTATTCCTGCCTCTTTACTTCGTATCAAGTGGATTGAAGACTAATGTAGCCACAATTCAAGGAGCACAATCATGGGGTCTTCTAGTTTTAGTTATAGTAACTGCCTGTTCCGGAAAAATCCTTGGCACTTTTCTGGTGTCCCTTCTTTGTAAAGTACCTGTTCGTGAGGCTCTCGCATTAGGATTTCTAATGAACACGAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGTAAAGATAGAAAGGTTTTGAATGATCAGACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACTTTTATTACCACTCCCCTTGTCATTGCTGTATACAAGCCGGCAAGGAGTGCCAAAATAGCAGATTACAAACATAGGAAAATCGAACGGAAAAACAAAAATACACAGCTTCGGATGTTGACGTGTTTCCATAGTGCAGGAAATGTTCCGTCGATTATAAATCTGCTCGAGGCCTCGAGAGGAACTGAGAAGGGAGAAGAACTTTGTGTGTATGCAATGCATCTCATGGAGCTGTCCGAGAGATCCTCAGCCATTTTAATGGTACACAAGGCCAGGAAAAATGGTTTGCCTTTCTGGAATAAGGGACAGAGGTCGGATTCCAACCATGTTATTGTCGCTTTTGAAGCTTACCAACAACTGAGCAGAGTATTCATCCGACCAATGACGGCGATTTCTTCCATGTCTGATATACATGAAGACATTTGCGCCACCGCTGAGAGGAAAAGAACTGCAATCATAATTCTTCCATTCCACAAGCACCAGAGGGTGGATGGTTCACTGGAGACTACTCGAAGCAGCATCCGTGTTGTTAATCAGAATGTTCTTGAGCATGCTCGATGTTCAGTTGGAATTTTTGTTGATCGTGGGTTAGGTGGTACAACCCATGTTTCGTCAAGCAATGTTTCACTTTTCATCACTGTTCTGTTCTTTGGTGGTGGAGATGATCGCGAAGCACTTTCTTTTGGAGTTCGTATGGCCGAGCACCCTGGTATTAGGTTGATGGTTATTCATTTCTTTGTTGAACCCGAGCCCATTGGGGAGATAACCAGTGCTGATACTGTTGGGAATTCTTTGGCGAAGACAGTTCCTCAGGATGATGAATTTCTGTCAGAGTTCAGGCACAATGCAAGCAAGAATGATTCCATCACATATGTAGAGAGAACTATAAAAACTGCTGCAGAAGCAATGAGTACAGTACAAGAGCTGAAACACTGCAATCTGTATCTCGTTGGTCGAACACCGGGTCTCAATTCAAGTTTTGCCTTAAACAGAAACGACTGTCCGGAGCTTGGTCCAGTTGGGAACCTGCTGACTTCACTGAACTTCCCGATTACAGCGTCGGTTTTGGTGGTACAGCAATATCGTTCCCAGTTACCCGTGAATTCAGCTTCAGATTCTGCTGATGGAGAATCCGAATCAGCATAA 2400 43.12 MASNATAVTLCPTPMKATSNGIFQGDNPLDFALPLIILQICLVVALTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKNFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKAFGIAITGICVPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVFLSGCGFVVAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSSLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACSGKILGTFLVSLLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSAKIADYKHRKIERKNKNTQLRMLTCFHSAGNVPSIINLLEASRGTEKGEELCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGQRSDSNHVIVAFEAYQQLSRVFIRPMTAISSMSDIHEDICATAERKRTAIIILPFHKHQRVDGSLETTRSSIRVVNQNVLEHARCSVGIFVDRGLGGTTHVSSSNVSLFITVLFFGGGDDREALSFGVRMAEHPGIRLMVIHFFVEPEPIGEITSADTVGNSLAKTVPQDDEFLSEFRHNASKNDSITYVERTIKTAAEAMSTVQELKHCNLYLVGRTPGLNSSFALNRNDCPELGPVGNLLTSLNFPITASVLVVQQYRSQLPVNSASDSADGESESA* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4157503 4161762 - CsaV3_4G006260.1 Csa04g00626 526236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00626 799 Gene3D - 35 438 IPR038770 -
Csa04g00626 799 PANTHER CATION/H(+) ANTIPORTER 18 7 792 - -
Csa04g00626 799 Pfam Sodium/hydrogen exchanger family 42 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa04g00626 799 PANTHER CATION/H + ANTIPORTER 7 792 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01615 Csa-Chr2:15210953 Csa04g00626 Csa-Chr4:4157503 0 dispersed
Csa04g00626 Csa-Chr4:4157503 Csa04g00628 Csa-Chr4:4174984 0 dispersed
Csa04g00626 Csa-Chr4:4157503 Csa04g00627 Csa-Chr4:4166789 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00626 - - csv:101223205 1486.09