Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00627 ATGGCCACGGTGACCACCCATAATGCGACGGCGCCTGCTGGTGTTTGTCCTCCGGCTATGAAAGCCACCTCCGATGGCATTTTTCAAGGCGATAATCCTCTTAATTATGCTCTTCCTCTTGCCATCCTTCAGATTTGTCTCGTCGTCCTTCTCACTCGCCTTCTCTCTTTCCTCCTTCGTCCCATCCGCCAACCTCGTGTTATTGCTGAGATCGTCGGCGGCATCTTGTTGGGTCCATCGGCACTTGGCCGGAACTTGGCTTACTTACACACAATCTTCCCGCCGAGGAGTCTCACCGTATTAGACACATTGGCCAATTTGGGTCTTCTCTTCTTCCTCTTTCTCGTCGGCTTGGAGTTAGACCTTAAATCCCTCCGCCGCACCGGAAAACGAGCCATGTGCATTGCCTTTGCTGGGATCACTCTCCCCTTCGTCCTTGGAATCGGTACCTCCTTCATTCTGCGATCAACCATCTCCAAAGGAGTCAATGAAGCTGCATTGCTCGTCTTTATGGGTGTCGCTCTTTCCATCACTGCCTTCCCTGTTCTCGCTCGAATTTTGGCGGAGCTCAAGCTTTTGACAACCGATGTCGGTCGGATGGCTATGTCCGCCGCTGCCGTTAACGATGTCGCAGCCTGGATCCTTCTAGCGCTGGCAATTGCACTCTCTGGCACCGGAAACTCCCCTCTCGTCTCCCTCTGGGTTTTCCTCTCTGGAGCTGGTTTTATTATTTTTTGTACCTTCGCAATTCCACCGGTGTTCCAGTGGATGTCGGAACGGTGTTCTGAGGGTGAGCCGGTGAAGGAATTGTACATTTGTGCCACCCTTTCCATTGTTTTGGCTGCTGGGTTCATGACGGATTTGATCGGAATCCATGCCCTCTTTGGAGCTTTCGTCGTTGGTGTTTTAATTCCGAAAGAAGGACCATTTGCCGGAGCTTTAGTTGAGAAAGTTGAGGATCTTGTCTCCGGTCTTTTCCTTCCATTGTACTTCGTTTCCAGTGGATTGAAAACAAATGTTGCAACAATTAAAGGAGCTAAATCATGGGGCCTTCTTGTTTTAGTCATTTTCAATGCTTGTTTCGGTAAAATCGTCGGAACTGTCTCTGTTTCGCTGCTCTGCAAAATGCCATTTTCAGAATCACTTGCTTTGGGGTTCTTAATGAACACGAAAGGCTTGGTGGAATTAATTGTTTTAAACATCGGCAAAGATAGGAAGGTTTTGAATGATCAAACATTTGCAATTATGGTTCTAATGGCAATCTTCACAACATTCATCACAACCCCGATTGTTATTGCTGTCTACAAGCCGGCCAAAAAACATACCAAATCTAATTACCAGCATAGAACAATAGAGAGGAAAAATCCTAATTCCGAGCTTCGAATTCTTGCTTGCTTCCATTCCTACGGAAACATTCCGGCGACGATTAACCTTATTGAAGCTTCTCGAGGGATTGAGAAAAAAGATGGGCTATGTGTTTATGCTCTGCATTTAACAGAGCTAACAGAGAGATCATCCGCCATTCTTATGGTTCACAAAGCACGGAAAAACGGCGTCCCCTTTTGGAACAAAGGTAGGGTTGATTCGAACCAGATCGTTGTCGCCTTCGAGGCATTTCGACAACTTAGCCGGGTTTCAATCCGGCCAATGACTGCCATTTCTGCTCTGTCCAACATGCACGAAGATATCTGTAGCAGTGCCGAAACGAAAAGGGCCGCCGTTATAATCCTTCCATTTCACAAACATCAAAGATTGGATGGATCTCTTGAAACGACGAGGACTGATTACAGGTCAGTTAACCGAAAAGTTCTGGAACAAGCCCCCTGCTCCATCGCAATTTTGATCGACAGAGGACTAGGTGGTGGGTCTCACGTCAATGCAAGTAACGTCTCTTCCACAGTCACAGTCTTTTTCTTCGGCGGGCCTGACGACCGTGAAGCTCTGGCGTTTGGAAAAAGAATGTCGGAACATCCCGGAATTAGGCTGCACGTTGTCCGATTCACACCCAGCACTGATTTCGTGACGGAATCCGTCGCGGTCGACGTAAACAATAATAGTTCGGAGGATTCTGACGGTGATAATAAAGCGTTAACGTCGATTGCGTATGAGGAGAGAAACGTGAGCAAAGGGAGCCAGGCCGTAGATGCAATGAAGGAATTTAATAAATCGAATTTGATTTTGGTAGGAAGATGCCCGGAGGGGGAAGTGGTGAGGAGTTTGAATACAAACGGTGGGGATTGTTCAGAGCTTGGACCAGTGGGCGGGGTGTTGGCATTACCGGAATTTTCGACGATGGCATCGGTGCTGGTGGTGCAGCAATTTCGCGGTGAACAATCAGTGTTCCCAATGGAGTCCACTTCCACTTCAAAAGGGGAATCTACCGAAGATGAACGTTGA 2397 47.81 MATVTTHNATAPAGVCPPAMKATSDGIFQGDNPLNYALPLAILQICLVVLLTRLLSFLLRPIRQPRVIAEIVGGILLGPSALGRNLAYLHTIFPPRSLTVLDTLANLGLLFFLFLVGLELDLKSLRRTGKRAMCIAFAGITLPFVLGIGTSFILRSTISKGVNEAALLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVSLWVFLSGAGFIIFCTFAIPPVFQWMSERCSEGEPVKELYICATLSIVLAAGFMTDLIGIHALFGAFVVGVLIPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIKGAKSWGLLVLVIFNACFGKIVGTVSVSLLCKMPFSESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPIVIAVYKPAKKHTKSNYQHRTIERKNPNSELRILACFHSYGNIPATINLIEASRGIEKKDGLCVYALHLTELTERSSAILMVHKARKNGVPFWNKGRVDSNQIVVAFEAFRQLSRVSIRPMTAISALSNMHEDICSSAETKRAAVIILPFHKHQRLDGSLETTRTDYRSVNRKVLEQAPCSIAILIDRGLGGGSHVNASNVSSTVTVFFFGGPDDREALAFGKRMSEHPGIRLHVVRFTPSTDFVTESVAVDVNNNSSEDSDGDNKALTSIAYEERNVSKGSQAVDAMKEFNKSNLILVGRCPEGEVVRSLNTNGGDCSELGPVGGVLALPEFSTMASVLVVQQFRGEQSVFPMESTSTSKGESTEDER* 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4166789 4170129 - CsaV3_4G006270.1 Csa04g00627 526237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00627 798 PANTHER CATION/H + ANTIPORTER 15 780 - -
Csa04g00627 798 Gene3D - 40 445 IPR038770 -
Csa04g00627 798 Pfam Sodium/hydrogen exchanger family 46 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa04g00627 798 PANTHER CATION/H(+) ANTIPORTER 17 15 780 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00627 Csa-Chr4:4166789 Csa04g00629 Csa-Chr4:4197249 0 dispersed
Csa04g00626 Csa-Chr4:4157503 Csa04g00627 Csa-Chr4:4166789 0 tandem
Csa04g00627 Csa-Chr4:4166789 Csa04g00628 Csa-Chr4:4174984 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00627 - - csv:101202937 1456.81