Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00628 ATGGCGGGGAATACGACGGCGCCGGGTGGCTGTCCGGCAGTGATGAAAGCAACGTCCAACGGTGTCTTTCAAGGCGACAATCCACTTGATTTCGCTCTTCCTTTAGCCATTCTTCAGATATGTTTGGTTGTTATTCTTACTCGTCTTCTTGGTTTCGCCTTCCGTCCCCTCAGACAACCTCGAGTCATTGCTGAGATTGTCGGAGGAATATTGCTGGGACCGTCGGCATTGGGTCGGAGCCAAGAATTTCTTCACACAGTTTTTCCGGCGAGAAGCCTATCGGTTTTGGACACGTTGGCGAATTTGGGTCTTCTTTTCTTCCTATTTTTAGTGGGTTTAGAGTTAGATCTCAAATCCCTCCGCCGTACCGGAAAAGGTGCAATGGCCATAGCCGTCGCAGGGATCACCCTCCCTTTCGTCCTCGGCATCGGAACCTCTTATGTCCTCCGTTCCACCATCTCCAAAGGCGTCAGTGGCCCTCCTTTTCTTGTTTTCATGGGCGTTGCTCTCTCCATTACCGCTTTCCCTGTTCTTGCTCGCATTCTCGCCGAACTCAAGCTCTTAACCACCAACGTCGGCCGCATGGCCATGTCCGCCGCCGCCGTCAACGACATAGCTGCTTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACTGGCCGTTCCCCTCTCGTTTCCCTCTGGGTTTTCCTCTGCGGCGCTGGTTTTGTTCTGTTTTGCTTCTTCGCTCTCCCCCCAGTCTTTCAATGGATCTCCCGCCGTTGCTCCGATGGCGAACCCGTCAGCGAACTCTACATTTGCGCTATTTTATCCACCGTCTTAGCCGCTGGATTCGTCACCGACTTAATCGGAATCCACGCTCTATTCGGTGCTTTTGTCGTCGGCGTCCTCGTGCCAAAGGATGGCCCACTCGCCGGAGCTCTCGTCGAGAAAGTCGAAGATCTTGTATCGGGTTTATTCCTCCCTCTCTATTTCGTATCAAGCGGATTAAAAACTAACATCGCAACAATCAAGGGAGCACAATCATGGGGTCTCCTCGTTCTGGTAGTATTCACCGCTTGTTTTGGGAAAATCATCGGAACAATCTCTGTAGCACTCTGTTTCAAGATGCCATTTCAAGAATCAGTTGCTTTAGGATTCTTAATGAACACAAAAGGGTTAGTGGAATTAATCGTTTTAAACATCGGCAAAGACAGAAAAGTTTTGAATGATCAAACATTCGCAATCTTAGTTCTAATGGCTATAATCACAACATTCATCACAACCCCAATTGTAATGGCGGTTTATAAACCAGCAAAAAGAAAGAGCAAATCGGAATACATAAACAGAACAATCGAGCGAGATGAACCCAATTCAGAGCTGAGGGTTTTGGCTTGTTTTCACTCTGTTAACAACATTCCATCGATTTTGAATTTGATTGAGGTGAGTCGTGGAAAAGAAGGTCGTGGGCGGCGGCTTTGTGTGTATGCAATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCGATTGTAATGGTGAACAGAGCAAGAAAGAATGGATTGCCGTTTTGGAATAAAGGAGGGAAATCGGATTCAGATCAAATTATTGTAGCGTTTGAGGCATTTCAGCAGCTTAGTCGAGTGTCAATACGTCCGATGACGGCCATTTCTCCGTTTTCAGATATGCATGAAGATGTTTGTAACAGTGCTGAGAGAAAACGGGCCGCCATTATCATCCTTCCATTCCATAAACACCAAAGGTTTGATGGATCTTTGGAGACAACACGGACTGATTTTCGATGGGTTAATCAAAAGGTTCTCGAACAACCACCATGCTCCGTCGGGATCTTAGTCGATCGAGGTCTTGGAGGTGGCTCCCACATATGTGCTAGCAATGTCTCTTCCACAATAACCGTCTTCTTCTTCGGAGGTCGTGACGATCGTGAAGCCTTAGCCTATGGTCGAAGAATGGTAGAGCATCCAGGAATAACCCTCAACATCGTACATATTCTTCCTAGCTCTGACATGGCTACAGAATCAACCGTAATCGACATGCATTCCAAAGATGATACTAATACTTCAACACTCATGGATCAAAAAGTGTTGATGGAGTTCAATGTGAAGAAAATAGATGACGAGTCAATTAGATATGAGGAGAGAACAGTGACCAAATACAATGACACAATTGAAGTAATAAGAGAATTTAGTAGGTGTAATTTGATATTGGTGGGTCGAGCCCCTGAAGGTCAAGTAATAGAGAGTCTTCATTTCAAAGGTGGCGATTGCCCGGAGTTGGGTCCTATCGGCAACTTGTTGACATCAACAGAGATCTCAACATCAGCTTCAGTGTTGGTGGTACAACAATTTCGAGGTCCATTGTTGCCTTCTTCGTCCACCTCTACAGCAACAGTATTACCCGAAGAAGTTACTGAGTAA 2418 46.94 MAGNTTAPGGCPAVMKATSNGVFQGDNPLDFALPLAILQICLVVILTRLLGFAFRPLRQPRVIAEIVGGILLGPSALGRSQEFLHTVFPARSLSVLDTLANLGLLFFLFLVGLELDLKSLRRTGKGAMAIAVAGITLPFVLGIGTSYVLRSTISKGVSGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDIAAWILLALAIALSGTGRSPLVSLWVFLCGAGFVLFCFFALPPVFQWISRRCSDGEPVSELYICAILSTVLAAGFVTDLIGIHALFGAFVVGVLVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVFTACFGKIIGTISVALCFKMPFQESVALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPIVMAVYKPAKRKSKSEYINRTIERDEPNSELRVLACFHSVNNIPSILNLIEVSRGKEGRGRRLCVYAMHLMELTERSSAIVMVNRARKNGLPFWNKGGKSDSDQIIVAFEAFQQLSRVSIRPMTAISPFSDMHEDVCNSAERKRAAIIILPFHKHQRFDGSLETTRTDFRWVNQKVLEQPPCSVGILVDRGLGGGSHICASNVSSTITVFFFGGRDDREALAYGRRMVEHPGITLNIVHILPSSDMATESTVIDMHSKDDTNTSTLMDQKVLMEFNVKKIDDESIRYEERTVTKYNDTIEVIREFSRCNLILVGRAPEGQVIESLHFKGGDCPELGPIGNLLTSTEISTSASVLVVQQFRGPLLPSSSTSTATVLPEEVTE* 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4174984 4180221 - CsaV3_4G006280.1 Csa04g00628 526238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00628 805 PANTHER CATION/H(+) ANTIPORTER 17 10 790 - -
Csa04g00628 805 Gene3D - 35 440 IPR038770 -
Csa04g00628 805 PANTHER CATION/H + ANTIPORTER 10 790 - -
Csa04g00628 805 Pfam Sodium/hydrogen exchanger family 41 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00626 Csa-Chr4:4157503 Csa04g00628 Csa-Chr4:4174984 0 dispersed
Csa04g00628 Csa-Chr4:4174984 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g00627 Csa-Chr4:4166789 Csa04g00628 Csa-Chr4:4174984 0 tandem
Csa04g00628 Csa-Chr4:4174984 Csa04g00629 Csa-Chr4:4197249 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00628 - - csv:101203169 1525.38