Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00629 ATGATGGTGGTGAATACGACGATGGTGGGAAGTGGGTGCCCGGCGGAGATGAAAGCGACGTCGAACGGTGTATTTCAAGGCGATAATCCACTTGATTTTGCTCTTCCTTTGGCCATTTTTCAGATATGTTTGGTTGTTCTTCTTACTCGTCTTCTTGGTTTTCTTCTCCGTCCACTTAGAGAGCCTCGGGTCATTGCCGAGATTGTTGGGGGGATCTTGCTTGGGCCATCAGCGGTGGGTCGGAGTCAGGGATTTCTTCGAAGAGTGTTCCCGGAAAAAAGCCTAACAGTGTTGGACACATTAGCCAATATGGGTCTTTTGTTCTTTCTTTTTCTAGTCGGACTTGAGTTAGATCCCAAATCTCTCCGTCGTACCGGAAAAGGCGCAATGGGCATAGCCATGGCCGGAATCACTCTCCCTTTACTCCTCGGCATTGGCACTTCCTACGTCCTCCGTTCCACCATCTCCAAAGGCGTCAACGGTCCTCCCTTTCTCATCTTCATCGCCGTTGCTCTCTCCATCACCGCTTTCCCTGTTCTCGCTCGTATCCTTGCTGAACTCAAGCTTTTAACAACCAACCTCGGCCGTATCGCGATGTCCGCCGCCGCCGTCAATGACGTCGCTGCCTGGATCCTCCTCGCCCTCGCCATTGCCCTTTCCGGTACTCCTCGTTCCCCTCTTGTCTCCCTCTGGGTTTTCCTCTGTTCCTCTGTTTTTGTCCTGTTTTGCTTCTTCACTCTCCCGCCGGCCTTCCGATGGATCTCCCACCGTTCCTCCAAAGGCGAGCCCGTAAGTGAACTTTACATTTGCGCTACTTTATCCACCGTCTTAGCCGCTGGATTCATCACTGATTTAATCGGAATCCATGCTCTGTTCGGCGCTTTTGTCGTCGGCGTTCTCGTTCCAAAAGAAGGTCCACTCGCCGGAGCACTCGTCGAAAAAGTTGAAGATCTTGTTTCGAGTCTTTTCCTCCCTCTCTATTTCGTTTCAAGCGGATTGAAAACCAACATTACTACAATTCAAGGAATACAATCATGGGGTTTGCTCATCCTCGTAATTTTCACCGCATGTTTCGGTAAAATCATCGGAACGATCTTGATGGCACTCTTTTGCAAGATGCCAATACAAGAATCAATTGCTTTAGGATTCTTAATGAACACGAAAGGGTTGGTGGAATTAATCGTTTTAAACATCGGCAAAGACAGAAAAGTTTTGAATGACCAAACCTTTGCAATTCTTGTTCTAATGGCTGTCATCACAACCTTCTTCACAACCCCAATTGTAATGGCGGTTTATAAGCCAGCAAAAAGAAAGAGCAAATCAGAATACATAAACAGAACAATCGAACGAGAAGAACCCAATTCAGAGCTGAGGATTTTGGCTTGTTTTCACTCTGTTAATAACATTCCTTCCATTTTGAATTTGATTGAGGTGAGTCGTGGGATGGAGGGAAAAGAAGGTTGTGGAAGTGAACTTTGTGTTTATGCAATGCATTTGATGGAGCTGACAGAGAGATCGTCCGCCATTGTTATGGTCCATCGAGCTAGAAAAAATGGGAGACCGTTTTGGAATAAAGGAGGGAAGTCGAGTTGTGATGAAATTGGTGTGGCGTTTAAGGCTTTTGAACAGCTTAGTCGAGTGTCTATACGTCCAATGACTGCCATTTCTCGACTTTCGGATATGCACGAAGATGTGTGCAATAGAGCAGAGCGGAAACGGGCCGCCATTATCATTCTCCCTTTCCATAAACACCAAAGATTTGATGGACATTTAGAAGCAACACGAGGTGATTTCCAATCGGTCAATCAAAAAGTTCTACAACAATCACCATGTTCCGTCGGAATCCTAGTTGACAGAGGATTTGGAGGTGGTTCTCACATCTCCTCCACCAACATCTCTTCCACCATAACCATCTTCTTCTTCGGCGGCTGCGACGACCGTGAAGCTCTAGCCTTCGGACGGAGAATGTCACAACATTCTAAAACAACCTTAAACATTGTTCATTTCATTTTCACCTCCAACGTGAATAATGCAGAATCTACTATGGTTGAAATGAACAAAGACGACACTAAAAGTTCTGCAGTCATAGATGAAAGGGTGTTGATGGAGTTTAATGGGAAGAAAACAAACGAGATGTCGATTAGATATGAAGAGAGAGTAGTGAGCAGTTTTAGCAATGTTATTGAAGTAATAAGGGAATTTAGTAGATGTAATTTAATATTGGTGGGTCAAAAGCCAGAAGGGGAAGTAGTGAAGAATCTTGTTGAATATTTCAAGATCAATGTGGAATGCCCTGAGTTAGGTCCTGTTGGAAACTTATTGATATCAAAAGAGTTATCAATATCAGCTTCAATCTTGGTGCTGCAACAGTTTCGTGAGAATGTATTTACCTAA 2394 44.82 MMVVNTTMVGSGCPAEMKATSNGVFQGDNPLDFALPLAIFQICLVVLLTRLLGFLLRPLREPRVIAEIVGGILLGPSAVGRSQGFLRRVFPEKSLTVLDTLANMGLLFFLFLVGLELDPKSLRRTGKGAMGIAMAGITLPLLLGIGTSYVLRSTISKGVNGPPFLIFIAVALSITAFPVLARILAELKLLTTNLGRIAMSAAAVNDVAAWILLALAIALSGTPRSPLVSLWVFLCSSVFVLFCFFTLPPAFRWISHRSSKGEPVSELYICATLSTVLAAGFITDLIGIHALFGAFVVGVLVPKEGPLAGALVEKVEDLVSSLFLPLYFVSSGLKTNITTIQGIQSWGLLILVIFTACFGKIIGTILMALFCKMPIQESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAVITTFFTTPIVMAVYKPAKRKSKSEYINRTIEREEPNSELRILACFHSVNNIPSILNLIEVSRGMEGKEGCGSELCVYAMHLMELTERSSAIVMVHRARKNGRPFWNKGGKSSCDEIGVAFKAFEQLSRVSIRPMTAISRLSDMHEDVCNRAERKRAAIIILPFHKHQRFDGHLEATRGDFQSVNQKVLQQSPCSVGILVDRGFGGGSHISSTNISSTITIFFFGGCDDREALAFGRRMSQHSKTTLNIVHFIFTSNVNNAESTMVEMNKDDTKSSAVIDERVLMEFNGKKTNEMSIRYEERVVSSFSNVIEVIREFSRCNLILVGQKPEGEVVKNLVEYFKINVECPELGPVGNLLISKELSISASILVLQQFRENVFT* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4197249 4202381 - CsaV3_4G006290.1 Csa04g00629 526239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00629 797 Pfam Sodium/hydrogen exchanger family 42 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa04g00629 797 PANTHER CATION/H + ANTIPORTER 12 794 - -
Csa04g00629 797 PANTHER CATION/H(+) ANTIPORTER 17 12 794 - -
Csa04g00629 797 Gene3D - 37 442 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00627 Csa-Chr4:4166789 Csa04g00629 Csa-Chr4:4197249 0 dispersed
Csa04g00629 Csa-Chr4:4197249 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g00628 Csa-Chr4:4174984 Csa04g00629 Csa-Chr4:4197249 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00629 - - csv:101208346 1484.93