Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00635 ATGGCTGAAATCCAGCAAAATAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGAACAAGTGCTGCTTCGGAACTCTCGAGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTGTCTTGGAAAACGGAAAAAGGTGAAGAATTATTGTTTACCAGTTCTAAGGCAATTTTTAAGCCACCAAAAGCTGTGAGAGGAGGAATTCCAATTTGTTTTCCGCAGTTTGGGGCTCGTGGAAACCTTGAGCAGCATGGGTTTGCTCGTAACAAGATTTGGAAAATCGATGATAATCCTCCTCCTCTTAATCGAGGTGAAATCAAGGACAAATCCTGCATCGATTTGCTTCTTAAACCTTCTGAAGATGATCTGAAAATATGGCCACATAGTTTTGAATTCAGACTGAAGGTCTGTTTGGCAGCAGATGGGAATCTCATATTAATATCACGAATTTGGAATATCAATTGCAAGCCTTTCAGTTTCTCAATTGCATTCCACACATACTTCTCCATTTCTGATATCAGTGAAGTAAGAGTTGAGGGGCTTGAGGTTCTTGACTATCTCGACAACTTGCACGATAAACAACGTTTCACTGAACAAGGAGATGCCTTAACATTTGAATCCGAGATTGATCGAGTTTATCTTAGTTCTTCAGATCTCATCGCGGTGCTTGATCATGAACGAAAGCGCACTTTTGTTGTGAGAAGGGAAGGACTACCAGATGTTGTGGTGTGGAATCCATGGGAGAAGAAAGCAAAATCGATTGTGGATCTTGGGGATGAAGATTACAAACAGATGCTTTGTGTTGATGGAGCTGCAGTTGAGAAACCTATTACCTTGAAACCAGGTGAGGAATGGACTGGGCGCTTAGAACTATCCGTTATCCCCTCAAGTTAA 912 42.21 MAEIQQNNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSSKAIFKPPKAVRGGIPICFPQFGARGNLEQHGFARNKIWKIDDNPPPLNRGEIKDKSCIDLLLKPSEDDLKIWPHSFEFRLKVCLAADGNLILISRIWNINCKPFSFSIAFHTYFSISDISEVRVEGLEVLDYLDNLHDKQRFTEQGDALTFESEIDRVYLSSSDLIAVLDHERKRTFVVRREGLPDVVVWNPWEKKAKSIVDLGDEDYKQMLCVDGAAVEKPITLKPGEEWTGRLELSVIPSS* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4244509 4249209 + CsaV3_4G006350.1 Csa04g00635 526245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00635 303 Pfam Aldose 1-epimerase 24 297 IPR008183 GO:0005975|GO:0016853
Csa04g00635 303 CDD D-hex-6-P-epi_like 25 298 IPR025532 -
Csa04g00635 303 Gene3D - 17 300 IPR014718 GO:0030246
Csa04g00635 303 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 5 303 - -
Csa04g00635 303 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 5 303 - -
Csa04g00635 303 SUPERFAMILY Galactose mutarotase-like 18 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa04g00635 303 PIRSF PHexose_mutarotase 2 302 IPR025532 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00635 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101205699 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02167 Csa-Chr1:18798106 Csa04g00635 Csa-Chr4:4244509 7.22E-101 dispersed
Csa02g00649 Csa-Chr2:4902823 Csa04g00635 Csa-Chr4:4244509 1.38E-151 dispersed
Csa04g00577 Csa-Chr4:3784057 Csa04g00635 Csa-Chr4:4244509 2.14E-38 dispersed
Csa03g00837 Csa-Chr3:7118429 Csa04g00635 Csa-Chr4:4244509 2.02E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00635 Csa_Chr04 FPKM 0.0 0.0 14.242746 15.374969 94.931053 97.563957 81.859207 0.0 0.0 0.0