Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00638 ATGGACAAAACAATAATGAATTATTGTTATTGGTTAGTAATGATGATGATGATTATGGGTTCATGCGTTGATGCATTCACTCATATTGTTGGTGGAAGCCATGGTTGGAGAGTCCCTGAAAATGATTCCTTTTTTGATCAATGGGCTAAACCAAGAACCTTTGGTGTTGGTGATAGGCTTGTTTTCCCGTACCGAGCTGGTGCGAACAACCTAGTGACAGTAAAGAAGGCAGACTATGATACATGTGGGGAAGAAGAAGTAATATACATGTATTTTCTAGGGCCAACAGTAGTGAACCTAACAAAGGCTGGTGATTACTATTACTTTGATGGAATTGGAAAGCATTGCGAAGCTGGTCAGAAGCTCCACATCCAAGTTGGTACCAAAGAAGGAAGCTCTGGGTCTGATCCTTTACCATTTAACCTCGAAACTTTTGGAATCCACACCAATTTGGGGCCAGCCCTTTCCCCTCAAGGCCAAATGGATGCCGAATCCGTATCCCAAGCCCAATCCCCATCCGGTACTCCCGCTCACCCATCCAATGCCTTCCTTCTTCTTCCTACACCAATGTTATTGGCTCTTATCATTCCTACCCTTTTTTCCATTTTTCTTTCATTCCCATTTCCATATATTAAGTAA 639 42.41 MDKTIMNYCYWLVMMMMIMGSCVDAFTHIVGGSHGWRVPENDSFFDQWAKPRTFGVGDRLVFPYRAGANNLVTVKKADYDTCGEEEVIYMYFLGPTVVNLTKAGDYYYFDGIGKHCEAGQKLHIQVGTKEGSSGSDPLPFNLETFGIHTNLGPALSPQGQMDAESVSQAQSPSGTPAHPSNAFLLLPTPMLLALIIPTLFSIFLSFPFPYIK* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4269193 4270379 - CsaV3_4G006380.1 Csa04g00638 526248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00638 212 ProSiteProfiles Phytocyanin domain profile. 26 128 IPR003245 GO:0009055
Csa04g00638 212 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Csa04g00638 212 Gene3D - 26 137 IPR008972 -
Csa04g00638 212 PANTHER BLUE COPPER PROTEIN 3 143 IPR039391 GO:0009055
Csa04g00638 212 PANTHER OS05G0570900 PROTEIN 3 143 - -
Csa04g00638 212 Pfam Plastocyanin-like domain 36 120 IPR003245 GO:0009055
Csa04g00638 212 SUPERFAMILY Cupredoxins 25 126 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00638 - - - csv:101205463 441.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00638 Csa-Chr4:4269193 Csa07g02149 Csa-Chr7:20478760 8.54E-25 dispersed
Csa06g00285 Csa-Chr6:2071750 Csa04g00638 Csa-Chr4:4269193 2.73E-16 dispersed
Csa04g00638 Csa-Chr4:4269193 Csa07g02147 Csa-Chr7:20473111 9.05E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g100 Blo02g01139 Blo03g00241 . Bda08g00485 Bpe05g00679 . . . . Cmo16g00610 . . . . . . . . . . . . . . Cla07g01409 Cam07g1509 Cec07g1606 Cco07g1564 Clacu07g1499 Cmu07g1469 Cre07g1846 . . Cone6ag0833 Cone9ag0832 . . . Cme07g01585 . . . . . . Bma05g00852 . . . . . Cma16g00561 . . . . . . . . . . . . . . . . . . . Csa04g00638 Chy07g01173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007925 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00638 Csa_Chr04 FPKM 54.412228 52.85305 394.874725 376.983612 356.033173 380.811401 358.574127 102.028 116.309822 107.811302