Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00643 ATGGAGCCAACTGTAAATGAGAGAGTCATGAGGTCCAGAAGGACTGTCTTCAGCAACAGTCCGATTAGAACAAGTGATAGAGAGGATATAGATGACTATGAGAGAAAAATTGGGAAGGAAACTAAGGGAGTTTGGCCTATGCAGAGGCTTGGAGATAAAGAAATTGGTTCGGTTGAAGAAACGCACAGTCAATTTTCAGAACAACGTATCGAGAATTGGGTTCGACGGTATAATATTGAACAAGACATGAATATTTATGATTCTGATTCTCCAAGTAAAGCACCTTATCGTAATCCTACTGGAGCAGCAAGAACCCGAGCTACTTTTGAGCATCATAGAGTTGAAAGAGATGCATTCGCAGGGTATTCTGGAAACTCTATGGCTGGTGCTCATGGAAAAGGAGCTCCAAATTTCCGCTATCCTGGTGACAGACCTTCAAGTTCTAACTTGAATGTGTATTATGGCCATCCCGAGCCTAATCGGAACTATGAAGGTCCTATAGAAGGCTTTGACCCAAATCGAGCTGAACTCCTAAGGAGGTTGGATGAGTTGAAAGCCGAAATTATTAAGTCCTGTGATGTGGGAGATAGACCAAGAGTTGTTGCTGATAGAGCTCCAGTTGACCCATATTACAGTCGAGCTGGTTACAATGTCCCAATGCGATCTTCGACAAAGAACCCACAGCATAACCACGACCCTCAGTACTTCGGTCGGGGAAGTGGAACCTTTCCAGCAACAGGTCATCATCAAAGAAATGGTGAGGATTTCTTACATCCTCCGAGGCATGTTGTGAAAGATATGCCATTGTACGAGGATGAGTTTCAGGAGCAAATGATAAGGAAGACTAACCATCAGCCAGCCCATCAGTATCCTCCACGACAACACTATCCAGAAAGCGTCATGGATTTCAAACAAGATCCTCTTTCTCCATTGCATGACGAAGATGTTTTTTTTCACCATCCTGCCTGCTCTTGTTCACAATGCGGCAAAAGGAACAGGCAAGGGCCACCAAATTCCCCTGCAAGCAACGTAAGTAATCCGAAAGAGCCAATAAAATCTAGCACGTATCATAATGAAACTCCTGTTTCAGTTGGACTCATGGCTTCCAATCTGCCGTGTGCTGGCCGTTTTCCATCTCAAGACACACTTCCACACTCTAGACAACCTAGCGAGCTTGATTCAGAGATTGATGGTTTTGGTCTTGTTCAACCAAGAACGGCTGCAGTTTTCCAGAGAAATGGAAAATCTCGAGATGCAATTGCTGGCGGTGCTCCATTCATTGTATGTTCTAGTTGCTTGGAGTTACTGAAATTGCCAAGAAAACTTTACAGGTTGGAGGTGGATTGGCAGAAACTACAGTGTGGTGCTTGTTCGGTTGTCATTATCGTAAAAGTAGAAAATAGAAAGCTTGTTATTAGCGTTCCAGCAGAAACCAAGCCTACTGAAGTTTCTCCTAATGATAGTTCCCCCAAAAGCGTTGTCAATGCTACCAGCTCCATAGAAAGTTCTGATAATTCTAGTCTTAAAGTGATCGATACCGACCACAACAAGCCCTCTGACGACCAGGATTCAAATTGCGCTAAACCACAGGAGGAGGTAACTTCATCTCCCATTTCTTCCAAGGAAAAAGAGTCCCCAACTATTAATTGTGATCCCAAAAATCTCTCTGACTCTGATGACCTGCCTTTGAAAGATACACCATCTGTAATAAGTTCCGTGGAGAATTCTGACAACCCTTCTCATGATAAACCTAGCGAACACAGAGAAGGAACTGAAGATAAGCAGAAAGTTATGGTAGATGATGTCACCGAACCAAGTGAGTTAGACGTCTCGTTTGATGATTATGCAAACATTCATGTTTCTCATGATTCTGTGGAAATAAACAAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGATCAAAGCAAGATCAAAAGCAATCAAGAATCTGAAACCTTCTTTGTGGGTCTCAGTAGAAACAACTTGAGAGATTTTTCAAGATCAAGTGAAATTACGGATAATGGAAGGCCTACTGTTTCGGTTAATGGCCAGCCTTTACCAGCTCATATAGTTAAAAAGGCTGAAAAGCATGCTGGACCCATTCTTCCTGGAGATTATTGGTATGATTACCAAGCTGGATTCTGGGGTGTAATGGGCCATCCATGTCTTGGAATTATTCCTCCATTTATCGACGAGTTCACCTATCCAATGTCAAGGAACTGTGCTGCTGGAAACACTGGAATCTTTGTCAATGGGAGAGAGCTTCATAAAAGGGATTTGGAGTTGCTTTCTAGCAGAGGGTTGCCTACTACTACAAATAAATTGTATAGAATCGACATTTCGGGAAGAGTTATAGATGAAGACTCTGGAAAAGTGTTGTATAACCTGGGAAAACTTGCCCCAACCATTGAGAAGGTAAAACATGGGTTTGGCATGAAAGTACCAAGAACACTCAAGTGA 2475 42.59 MEPTVNERVMRSRRTVFSNSPIRTSDREDIDDYERKIGKETKGVWPMQRLGDKEIGSVEETHSQFSEQRIENWVRRYNIEQDMNIYDSDSPSKAPYRNPTGAARTRATFEHHRVERDAFAGYSGNSMAGAHGKGAPNFRYPGDRPSSSNLNVYYGHPEPNRNYEGPIEGFDPNRAELLRRLDELKAEIIKSCDVGDRPRVVADRAPVDPYYSRAGYNVPMRSSTKNPQHNHDPQYFGRGSGTFPATGHHQRNGEDFLHPPRHVVKDMPLYEDEFQEQMIRKTNHQPAHQYPPRQHYPESVMDFKQDPLSPLHDEDVFFHHPACSCSQCGKRNRQGPPNSPASNVSNPKEPIKSSTYHNETPVSVGLMASNLPCAGRFPSQDTLPHSRQPSELDSEIDGFGLVQPRTAAVFQRNGKSRDAIAGGAPFIVCSSCLELLKLPRKLYRLEVDWQKLQCGACSVVIIVKVENRKLVISVPAETKPTEVSPNDSSPKSVVNATSSIESSDNSSLKVIDTDHNKPSDDQDSNCAKPQEEVTSSPISSKEKESPTINCDPKNLSDSDDLPLKDTPSVISSVENSDNPSHDKPSEHREGTEDKQKVMVDDVTEPSELDVSFDDYANIHVSHDSVEINKEEEEEEGEEGEEGEEDQSKIKSNQESETFFVGLSRNNLRDFSRSSEITDNGRPTVSVNGQPLPAHIVKKAEKHAGPILPGDYWYDYQAGFWGVMGHPCLGIIPPFIDEFTYPMSRNCAAGNTGIFVNGRELHKRDLELLSSRGLPTTTNKLYRIDISGRVIDEDSGKVLYNLGKLAPTIEKVKHGFGMKVPRTLK* 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4300553 4305570 + CsaV3_4G006430.1 Csa04g00643 526253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00643 824 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 40 821 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 528 554 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 628 642 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 85 104 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 579 597 - -
Csa04g00643 824 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 40 821 IPR040244 GO:1900150
Csa04g00643 824 MobiDBLite consensus disorder prediction 621 655 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 479 507 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 508 527 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 327 357 - -
Csa04g00643 824 MobiDBLite consensus disorder prediction 478 597 - -
Csa04g00643 824 Pfam Probable zinc-ribbon domain 421 464 IPR021480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00643 - - - csv:101207125 1672.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00643 Csa-Chr4:4300553 Csa06g02894 Csa-Chr6:25157032 1.63E-11 dispersed
Csa03g00824 Csa-Chr3:7047854 Csa04g00643 Csa-Chr4:4300553 2.46E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004376 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00643 Csa_Chr04 FPKM 1.790236 1.111641 42.923595 47.373817 0.563435 0.684732 0.519953 0.144259 0.163007 0.320018