Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00647 ATGGAGAAGGCTATGGCGACCTTTCACAAAGGCACCCTCTGTTCAGCTTGGAACTACTCCTCCACCAGATTAGCCACCGCTTCTTCCGACGGAACCCTCGTCATCTTTGATTCTCCCCACCCTTCTTCTTCCTCCACCTCCTTTACTCCCACCTCAAACTTCAAGGCGCACGAGGTTGCAATTACCAAGATTGTTTGGGTACCTCCGGAGTATGGTGATTCTGTTGCGTGCATATGTTCAGATGGAACTTCATCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCCCTACAGTGGAAGCTATGCAAACTCTTCAAAAGTAATTCATCTCAAATCCTAGACTTGCAATTTGGAAATTCCTCCTCTGGTCTGAAAATGATTGCTGCATTTTCAGATGGTTATATAAAAGTTTATGAGCTTATGGATCCTTTGAATTTGAAGAACTGGCAACTTCAGGCTGAATTTCAGAATGTTATTGATTCCATTTCTACAGTCAGGAAATCTTCTTGTTCATCTGCAAGTATATCATGGAATCCTCATCGAGGGGAGCAGCAATCAAGCTTTGTTATTGCTTTTAGTTCCAATACACCGCAGCTTAATTCGGCCAAGGTTTGGGAATTTGATCAGGCTCATCACAGATGGCTTCCTGTGGCAGAGTTGGCTTTGACTGCTGAGAAAGGTGATGAGGTTTATGCTGTCGCGTGGGCACAAAATATTGGAAGGCCATATGAGGTAATAGCTGTTGCAACCCAGAGAGGAATTGCAATATGGCATCTTGGATTAAGCCCCGACATGGATGGAAGGCTCTCAAGAGAAAGAGTTGCTCTGCTTTCTGGGCATAATGGCGAGGTGTGGGAGATGGAGTGGGACATGGGTGGTATGACATTAGCATCAACAGGAAAGGACGGGATGGTACGGTTGTGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCGACTTCTTAA 981 45.77 MEKAMATFHKGTLCSAWNYSSTRLATASSDGTLVIFDSPHPSSSSTSFTPTSNFKAHEVAITKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKLFKSNSSQILDLQFGNSSSGLKMIAAFSDGYIKVYELMDPLNLKNWQLQAEFQNVIDSISTVRKSSCSSASISWNPHRGEQQSSFVIAFSSNTPQLNSAKVWEFDQAHHRWLPVAELALTAEKGDEVYAVAWAQNIGRPYEVIAVATQRGIAIWHLGLSPDMDGRLSRERVALLSGHNGEVWEMEWDMGGMTLASTGKDGMVRLWQSNLNGVWHQHAAFEPTS* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4322551 4332383 + CsaV3_4G006470.1 Csa04g00647 526257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00647 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Csa04g00647 326 SMART WD40_4 47 88 IPR001680 GO:0005515
Csa04g00647 326 SMART WD40_4 1 37 IPR001680 GO:0005515
Csa04g00647 326 SMART WD40_4 98 139 IPR001680 GO:0005515
Csa04g00647 326 SMART WD40_4 270 309 IPR001680 GO:0005515
Csa04g00647 326 Pfam WD domain, G-beta repeat 276 308 IPR001680 GO:0005515
Csa04g00647 326 Gene3D - 9 323 IPR015943 GO:0005515
Csa04g00647 326 PANTHER NUCLEOPORIN SEH1 1 325 IPR037597 GO:1904263
Csa04g00647 326 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 1 325 IPR037363 GO:0005198
Csa04g00647 326 SUPERFAMILY WD40 repeat-like 13 310 IPR036322 GO:0005515
Csa04g00647 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00647 K14299 SEH1; nucleoporin SEH1 - csv:101204248 654.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00647 Csa-Chr4:4322551 Csa07g02449 Csa-Chr7:22365580 1.58E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g116 Blo02g01142 . . Bda08g00478 Bpe05g00684 . . . . . . . . . . . . . . . . . . . Cla07g01417 Cam07g1518 Cec07g1614 Cco07g1574 Clacu07g1506 Cmu07g1476 Cre07g1853 Cone8ag0251 Cone12ag0258 . . . . . . . . . . . . Bma05g00861 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00647 Chy07g01163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010676 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00647 Csa_Chr04 FPKM 8.537415 12.612801 5.017537 6.835267 6.348588 0.0 8.869347 2.67456 2.376715 0.0