Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00648 ATGGAAAGCGGGTGGAGCTGGGATCAAAAGTCACTCATTGGTGAGCTAATTCAGGGGATGGAGCTTACCAAGCAATTGAGAGCAGAGTTGGGTTCAGCATCTGGAGAAGAAAGCAAAGGATCATTAGTACAAGGGATTTTATCTTCATATGAGAAAGCTCTTTTGATACTGAAATGGAACGGACCAATGAATCAGCTTCAGATGGTTGAAGCGACCCCTGGTTTGCCAAGCTCTCCAATTTCGGTTAATGGAAGTCCTTCTAGTGATGACTCTGGTAGAGTTCTCAAGGACCCTCAGGACTCCAGAAAAGAATCAAAGAAGAGAAAGACACAGCCCAGATGGACAGAACAAGTGAAAGTGAACTCTGAGACGGGATTCGAAGGACCCCATGAGGATGGTTATAGCTGGAGAAAGTATGGCCAAAAGGACATACTTGGTGCAACATATCCGAGAAGCTACTATAGATGCACTTTTCGCAATACTCAGAATTGTTGGGCAGTAAAGCAAGTGCAGAGATCAGATGAAGACCCTTCAGTGTTTGAGATTACATACCGAGGAAAGCACACATGTTCCCAAGGGAACTATTTAGCCCAAACATGTCATTCACCCGATAAGCAAGAACAGAAGGAAACTGACGGCGATCATCATGAGCTGCAGCCTTTGCAAGAAAACCTATTCGGTAATCAAACCATTCAGAACATCGAAAAGCTCGAAAATAAGGCATCTACCTTCTGCTTTGGCTCAAGCTCAACTTCTGTTGGATGTAAGGACATTGTAAATGCTGGCTTTTCAAGTTTAGCCATCGACACTCATTCTGCCTTGGGAACCTTTCCTCAGTCATTTACCTCCCCAACCTCACCTGACAAAAACTACTTCACTCCATCCCCATGCCAAAGAAGCAACGTAGGAGGGACTCATAGTGTGCAAAATCTAGATCCTGATGTCCATGAGATTTTCTCGGCCAACACTTCAGCTACCAATTCCCCTATCCTGGATTGGGATTTTCCATTTGATTCAGATCACATCAATCCAAATTTTCCATTTAATTCCCAAGGATTTTTCTACTAA 1068 43.73 MESGWSWDQKSLIGELIQGMELTKQLRAELGSASGEESKGSLVQGILSSYEKALLILKWNGPMNQLQMVEATPGLPSSPISVNGSPSSDDSGRVLKDPQDSRKESKKRKTQPRWTEQVKVNSETGFEGPHEDGYSWRKYGQKDILGATYPRSYYRCTFRNTQNCWAVKQVQRSDEDPSVFEITYRGKHTCSQGNYLAQTCHSPDKQEQKETDGDHHELQPLQENLFGNQTIQNIEKLENKASTFCFGSSSTSVGCKDIVNAGFSSLAIDTHSALGTFPQSFTSPTSPDKNYFTPSPCQRSNVGGTHSVQNLDPDVHEIFSANTSATNSPILDWDFPFDSDHINPNFPFNSQGFFY* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4328507 4332383 - CsaV3_4G006480.1 Csa04g00648 526258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00648 355 MobiDBLite consensus disorder prediction 71 132 - -
Csa04g00648 355 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00648 355 Gene3D WRKY domain 115 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00648 355 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00648 355 ProSiteProfiles WRKY domain profile. 131 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00648 355 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 352 IPR044810 GO:0003700
Csa04g00648 355 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00648 355 MobiDBLite consensus disorder prediction 71 92 - -
Csa04g00648 355 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 352 - -
Csa04g00648 355 MobiDBLite consensus disorder prediction 93 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00648 - - - csv:101204004 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00648 Csa-Chr4:4328507 Csa07g01448 Csa-Chr7:14754543 8.08E-45 dispersed
Csa03g02198 Csa-Chr3:19080570 Csa04g00648 Csa-Chr4:4328507 1.39E-61 transposed
Csa03g02994 Csa-Chr3:28527402 Csa04g00648 Csa-Chr4:4328507 6.31E-28 transposed
Csa05g00908 Csa-Chr5:7039039 Csa04g00648 Csa-Chr4:4328507 2.30E-10 transposed
Csa05g00910 Csa-Chr5:7047174 Csa04g00648 Csa-Chr4:4328507 2.61E-21 transposed
Csa03g00817 Csa-Chr3:7021640 Csa04g00648 Csa-Chr4:4328507 2.34E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g118 Blo02g01144 . . Bda08g00475 Bpe05g00686 Bpe07g00075 . Bma14g00630 Cmo06g01049 Cmo16g00604 . . . . . Cpe14g00467 . . . . . . . . Cla07g01418 Cam07g1519 Cec07g1615 Cco07g1575 Clacu07g1507 Cmu07g1477 Cre07g1854 . . Cone6ag0843 Cone9ag0840 . . . . . . Bda07g00461 . . . Bma05g00868 Bma12g00606 . . . . Cma16g00553 Car06g00866 . . . . . . . . . . . . . . . . . . Csa04g00648 Chy07g01162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004375 2 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31514 PF03106 WRKY 5.80E-26 CL0274 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00648 Csa_Chr04 FPKM 14.136783 13.233212 8.05033 8.456076 11.307253 13.581836 12.53332 5.361599 5.016292 5.295307