Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00651 ATGAACAACAAAATGCAAGAGCAGTTAAACAATCCCCAATTCATTTCCAATTCCAAAAGCTTCACCGACATTAGAACTCTCCTCTCCAATCTCCTCCTCTCTCCCCATTCAACCAACACTCTCGATTCCATTTTCTCCCACTGTCTCCCTTCCTCCGCTGCTCCTCCAACGGAGTCGCCGCTTGGCTCCTCTGTTTATCTCCGCCAGAGAGATCTTGTCCACCAATTCTGTTTAGAGAATCGAGATGCCTGCTCCTCGGCCAATTTGCACCTCCACCCACTTGGAATCTCCACTGGATATGGTGGTTTTCCGACGGCGGTCAAGAAGAAGCTGTACAGGGGAGTGAGACAGAGGCATTGGGGAAAATGGGTGGCGGAGATTAGACTGCCGCAAAATAGGATGAGGGTTTGGTTGGGAACTTACGACACGGCGGAGGCCGCCGCGTATGCGTATGACAGGGCGGCGTATAAGCTCAGAGGAGAATACGCGAGGCTGAATTTTCCGAATTTGAAGGACTTTAGAAATTTGGGATTCGCGGATTGCGGCCGATTGAATGCTCTGAAGAACTCTGTGGATGCAAAAATTCAAGCAATTTGTTTGAAGATGAAGAAGGAAAAGGCTAAAAAGAATAGCAAGAAATCGGATCCCAAAAACGGAGCCGTTTCTGAATCCTGTTCGATGTCGTCGTCGTCGCCGGCAGTGGAAGAGTGGTGTCGGAGCGGTGAAATGGGGTGCTCGTCTGTGGTTTCAGAAGATGGGTTTTGGAGGTCGGAGAATTCTCCGCCGGCGTCATCGTCGTCCTCAGGTTCGGCGGAGTCATCGGCGGCGGTGGCGGCGGAGGCGGTGGTCGGGGAAGGTGTTTGTGAAGGGTATTCTTCATTGGCGAAGATGCCGTCTTTCGATCCAGATTTGATCTGGGAAGTTCTTGCAAATTAA 936 50.96 MNNKMQEQLNNPQFISNSKSFTDIRTLLSNLLLSPHSTNTLDSIFSHCLPSSAAPPTESPLGSSVYLRQRDLVHQFCLENRDACSSANLHLHPLGISTGYGGFPTAVKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDFRNLGFADCGRLNALKNSVDAKIQAICLKMKKEKAKKNSKKSDPKNGAVSESCSMSSSSPAVEEWCRSGEMGCSSVVSEDGFWRSENSPPASSSSSGSAESSAAVAAEAVVGEGVCEGYSSLAKMPSFDPDLIWEVLAN* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4349086 4350464 - CsaV3_4G006510.1 Csa04g00651 526261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00651 311 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
Csa04g00651 311 MobiDBLite consensus disorder prediction 208 228 - -
Csa04g00651 311 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 311 - -
Csa04g00651 311 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Csa04g00651 311 CDD AP2 110 170 IPR001471 GO:0003700|GO:0006355
Csa04g00651 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00651 - - - csv:101206889 549.666
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g00651 Csa05g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00651 Csa-Chr4:4349086 Csa04g01841 Csa-Chr4:18031783 3.44E-42 dispersed
Csa04g00651 Csa-Chr4:4349086 Csa05g00207 Csa-Chr5:1256732 1.23E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g126 Blo02g01147 . Bda06g00142 . Bpe05g00691 . . Bma14g00632 . Cmo16g00601 Cma02g00907 Cma15g01277 Car02g00657 Car15g01151 . . . . . . . . . . Cla07g01421 Cam07g1522 Cec07g1618 Cco07g1578 Clacu07g1510 Cmu07g1480 Cre07g1857 . . Cone6ag0849 Cone9ag0847 . Csa05g00207 Chy09g01291 . . . Bda07g00459 . . Bpe11g00636 Bma05g00873 . . Cmo02g00914 Cmo15g01346 . Cma16g00550 . . . . Bhi12g00150 . . . . . Lcy12g1572 Cla01g00191 Cam01g0196 Cec01g0190 Cco01g0196 Clacu01g0192 Cmu01g0188 Cre09g2319 Lsi09g00178 Csa04g00651 Chy07g01159 Cme09g01837
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003850 3 1 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31515 PF00847 AP2 6.40E-14 CL0081 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00651 Csa_Chr04 FPKM 52.314533 57.196892 20.066811 19.531975 43.502502 51.57209 43.79092 23.867567 21.450129 22.481419