Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00655 ATGGCCTACTTAGGATCATTTCGTTACTTGCAATCATTAAACGTTTCCAATTGCCACAGGCTTTCGAGTTCTGGTGTATGGACTATTTCGGGGATGACTACTTTAAGGGAATTGAACGTTTCTAGATGTTTGAAAGTTACTGATGCTGGAATTAGGCATCTTTTGTCCATACCAACATTGGAAAAGCTATGCATTGCCGAAACTGGCATCACTGCACATGGAGTTACACTTCTTTCTTCGCTAAAAACATTGGTGTTCTTGGACTTGGGTGGTCTACCTGTCACCGATCAGGCTCTGAGCTCTCTTCAGGTGCTCACAAAATTACAATACCTTGACCTTTGGGGTAGCAAAATTTCTAACAGTGGATCCGATGTTCTTCAAATGTTTCCAAAGTTGAGCTTCCTGAATATAGCTTGGACTAGTGTCACCAAATTCCCCAACTTGCCTCATCTAGAGTGCCTGAACATGAGCAACTGCATCATTGACTCTACACTTAAAGGGCTTGGTGCTAAAGTTCCTCCAAGAAAGCTTATTGCCTCTGGAGCTACGTTTTCTAATGAGACTGAAGATCTGGGATTTGTTGCAATGGATGCCCTATATTATCTGGACTTTTCGAATGCTTCTCTTCACAGATTCTGCTTCTTATCTCGTATGAAAGCAGTAGAACATTTAGACCTTAGCTCTACTACCATAGGAGACAGTTCGGTCGAATTAATTGCGTCAGTTGGAGAAAATTTGAAATATCTAAACCTCAGCTGCACAGCAGTCAGCTCTTCTGGAATTGGAAGTTTAGCTGGAAAAGTATCCAATCTGGAAACTTTGTCACTCTCTCATACTATGGTTGATGATGTTGCTCTATCATATATGAATATGATGCCTTCCTTGAAGTGTATTGACCTAAGTGAAACAGACATCAAAGGTTATATACACCTATCAGCTCCAGAGACTGTGAAAGTTTTCTCGTTGACAGAATTGCAAAACCTTGATTGTTTAGAAATGTTGAATCTGGAGCATACTCATGTTGATGATGAATCTCTACGTCCATTATCAAGATTTCGGAAACTGAGTCACTTGATGCTTAGAAGTCCCTCATTTACAGACACGGTCTTGAGCTACTTGTCAATTTTGCCCAATCTAAAAACTCTCAGCATTCGTGATGCAGTTTTGACCAACCAGGCATTTGATACATTTAAACCTGTGGCAACTTTACAAAAGATAGACTTGAGAGGTTGTTGGCTTTTAACTGAGGATGGTCTTTCTGTATTCCACAGAAGATTTCCACAAATTGATGTTAGACATGAACTTTTTCACTTCTCATCCAATCCAACTTCCACTGATCAACCTTCAACTCATTTTATTCCAAAGAAAATACAACTGAACCAGACAAGCAGATCTACCGGCATGCCATCATATTTTGTAGATCAAAGGTTGAAGTATAGCAAAGAAGAGCTACTTGCCCTACAATTTTCTTCTCTGCCCCACGGTTCCACATCTGTCCCTGAAATGGGTCGGAAATCTGATACCTGA 1527 40.34 MAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIRHLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLDLWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDSTLKGLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALSYMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKIDLRGCWLLTEDGLSVFHRRFPQIDVRHELFHFSSNPTSTDQPSTHFIPKKIQLNQTSRSTGMPSYFVDQRLKYSKEELLALQFSSLPHGSTSVPEMGRKSDT* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4389376 4393529 + CsaV3_4G006550.1 Csa04g00655 526265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00655 508 SUPERFAMILY RNI-like 5 307 - -
Csa04g00655 508 Gene3D Ribonuclease Inhibitor 186 309 IPR032675 -
Csa04g00655 508 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 1 499 - -
Csa04g00655 508 SUPERFAMILY L domain-like 325 418 - -
Csa04g00655 508 Gene3D Ribonuclease Inhibitor 1 69 IPR032675 -
Csa04g00655 508 Gene3D Ribonuclease Inhibitor 70 171 IPR032675 -
Csa04g00655 508 Pfam Leucine Rich repeat 222 240 IPR001611 GO:0005515
Csa04g00655 508 Pfam Leucine Rich repeat 33 54 IPR001611 GO:0005515
Csa04g00655 508 PANTHER RECEPTOR-LIKE PROTEIN 14 1 499 - -
Csa04g00655 508 SMART LRR_CC_2 243 267 IPR006553 -
Csa04g00655 508 SMART LRR_CC_2 7 31 IPR006553 -
Csa04g00655 508 SMART LRR_CC_2 81 105 IPR006553 -
Csa04g00655 508 SMART LRR_CC_2 32 57 IPR006553 -
Csa04g00655 508 SMART LRR_CC_2 218 242 IPR006553 -
Csa04g00655 508 Gene3D Ribonuclease Inhibitor 310 444 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00655 - - - csv:101203036 1001.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00655 Csa-Chr4:4389376 Csa07g02127 Csa-Chr7:20357495 5.03E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00655 Csa_Chr04 FPKM 23.442114 29.025696 6.048083 6.161203 22.243454 24.506105 22.674158 2.868785 2.886194 3.010229