Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00657 ATGGCTTACCGGCGCAGCCTTTGCACAAGAGCAAATCTTATAGCTCGACAATATCATCCATCGATTGGTGTCTTTGGTCAAACCGATGACCGTAAAAAACAACATTTGGATGAAGATTCAATTTCCCATGACAGAATCAATAGTTTCTTGCAGAGGAGATCATTTGGAACCAGCTTTAATAAGTCGTACAGGTCTAATTTTTTTGATCTTGGTAGAAAATATCCAAACACTTTCGTCTCCCCAAGCGCTGGTTCCTTTTTCTGTCGCTACATGTCAAGTACCATTGGCGAAGGGTCTGAAAACATTGAGTTCATGAGTAATGTTGCAGAAGTTCTCACAGATACAACAGTTCAATCAGCTGCATCTCAGGCTGCCGCTGCTAATGAAGTAGTTCTTGCTGCTGCTGATTCTTTTCTTCCTGTCAAGGGTGTGCAGTATTTTATAGATGCTATTCATTCTTATACTGGATTAAATTGGTGGGCTTGCATTGTATTAACAACCCTATTGATTCGTGGTGCAACATTCCCTCTTTTGATTAATCAACTCAAATCTACTGCCAAGCTTACTTTGTTGAGGCCTCACTTGGAGGAGGTGAAGAAGGAGATGCAAGAAAAGGGTATGGATCCAGGGGCGGTTGCTGAGGGTCAACGAAAAATGAAAAATCTTTTTAATGAGTTTGGTGTGAGCCCATTCACTCCGTTGAAGGGACTTTTTATTCAGGGTCCTGTCTTCATCAGTTTTTTCCTCGCGGTTTCAAACATGGCAGAGAAAATGCCTTCATTTAAAAATGGTGGAGCATACTGGTTTGTTGATCTCACGACTCCAGATACAATGTACATTTTCCCAGTTTTAACCGCGGTGACATTCTGGGTCACAGTGGAGTACAACATGCAAGAAGGCATGGAAGGCAACCCTATAGCTGGCACAATGAAAAATGTGATGAGGGGTCTTGCTATTGCTACGGTTCCCTTGACCATGCATTTTCCGAAGGCAATATTCTGTTACTGGGTTACATCTAATTTGTTCTCACTCGCATACGGGGCTGCTCTCAAAGTTCCTGGGGTTAAGAAGGCCTTGGGTGTCCCTGAAATACCAGAAGCCAATAGAAACAACCCCACACCACCACCTGCCTTTTCGTTTTTTAACGCTATGAAACAAGCAACAACAGCATCCAATGAAGCCACCACCACGAACACATTAACCGCTCAACCATCACAACCATCACAACCATCACAGTCCCAAGACCGAAAAAATTCATCATCGTCATTGATAAGCCAGAGGCTTAGAATCTTGGAGAAAGAAGTGAAGGGAAGGAAAAAGATGAAGAACAAGAAAAAGTGA 1341 42.73 MAYRRSLCTRANLIARQYHPSIGVFGQTDDRKKQHLDEDSISHDRINSFLQRRSFGTSFNKSYRSNFFDLGRKYPNTFVSPSAGSFFCRYMSSTIGEGSENIEFMSNVAEVLTDTTVQSAASQAAAANEVVLAAADSFLPVKGVQYFIDAIHSYTGLNWWACIVLTTLLIRGATFPLLINQLKSTAKLTLLRPHLEEVKKEMQEKGMDPGAVAEGQRKMKNLFNEFGVSPFTPLKGLFIQGPVFISFFLAVSNMAEKMPSFKNGGAYWFVDLTTPDTMYIFPVLTAVTFWVTVEYNMQEGMEGNPIAGTMKNVMRGLAIATVPLTMHFPKAIFCYWVTSNLFSLAYGAALKVPGVKKALGVPEIPEANRNNPTPPPAFSFFNAMKQATTASNEATTTNTLTAQPSQPSQPSQSQDRKNSSSSLISQRLRILEKEVKGRKKMKNKKK* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4407865 4415301 - CsaV3_4G006570.1 Csa04g00657 526267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00657 446 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEIN OXA1L 78 417 - -
Csa04g00657 446 PANTHER OXA1 78 417 IPR001708 GO:0016021|GO:0032977
Csa04g00657 446 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 158 345 IPR028055 -
Csa04g00657 446 MobiDBLite consensus disorder prediction 389 427 - -
Csa04g00657 446 Pfam 60Kd inner membrane protein 159 345 IPR001708 GO:0016021|GO:0032977
Csa04g00657 446 MobiDBLite consensus disorder prediction 389 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00657 K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase - csv:101223070 805.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00822 Csa-Chr2:7388014 Csa04g00657 Csa-Chr4:4407865 2.00E-19 dispersed
Csa02g01790 Csa-Chr2:17308421 Csa04g00657 Csa-Chr4:4407865 9.32E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003609 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00657 Csa_Chr04 FPKM 5.952381 5.589202 10.665913 11.071225 12.453138 13.552493 12.123741 8.365415 9.983159 10.198643