Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00658 ATGGCCCTCTCCCAATTCTCCGTCGCAGTCATCCTTCTTATCTTCTTTAACGGAGCTGAATCGCAGTTTCTTTGTAAAACCTCCTCCTGCAGTGGACGTTTGACGCCGGAAGTTCGATTCCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACTTGTTTTGCAACAAACGAAACCAAACGATTCTGAGTCTCCCGAACGCGGGAGACGTCAAGGTGGAGATTGTCGATTACAAATTTCAGAGGTTATGGATCAACGATCCGGATCAATGCTTTCCGAAACGGATACTAATGGATTCTTTCAGCCTAGAGGACTCTCCGTTCATTTATAATTATCGACTGGATAAATTCACTGTTCTCAATTGTTCCTATTACGTTGAAACACTCCCGTTCGATCGCGTACGGAGGATCAAATGTATGAGCGGCGCAAACTACAGTGTAATCAATGTTCCGGACAGAGACCTAAAGGCAGTTACGAATCTTCTACCGACGCCATGTAAAGTGATTACGACGAAGAAGCTTCCGTTGACGGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGAATGTGGAAATTGCGAGTTACGCGGTGGAGATTGTGGATTCAGAAGCAATTCGAGTGATGAAGTTGTGTGTTTCAATCTTCCGAAGAGCGGTATACCACGAGGTGCAAAATACGGCTTGATCATCGGCGTTGGAATCCCGGGCCTTCTCTTTCTAATCGGGCTGGTGTTTTACATCTGCGGCAAGTGCAAGGCCTTTGCTCGGCCCAATCGTCCAACTTCAAACCTTTCCCTTTCATTGGGCCATGAGCCCACTTCTACCAAAGCAGGCCTCGATGGCCCAACAATCGAATCATTCCCGAAAACAACATTGGGCCAGAGTCGACGACTTCCAAAGTCCAACGACACCACATGCGCCATTTGCTTGTCAGAGTACCAATCAAAGGAGACAATTAGAACTATACCAGATTGTGGTCACTTCTTTCATGCTAACTGTGTTGATGAGTGGCTTAAATTGAATGCCACGTGTCCAGTGTGTCGAACCTCGCCCGACGATTCTTCCGCCACCTCCACGCCTTCTCAATCAACGTCCGTGTCTGTGTCGTTGCCAACGTCACCCCGATCGTTGTCGCGTAATGATGACTAG 1182 48.22 MALSQFSVAVILLIFFNGAESQFLCKTSSCSGRLTPEVRFPFRLKNSQDSRCGYQPDFDLFCNKRNQTILSLPNAGDVKVEIVDYKFQRLWINDPDQCFPKRILMDSFSLEDSPFIYNYRLDKFTVLNCSYYVETLPFDRVRRIKCMSGANYSVINVPDRDLKAVTNLLPTPCKVITTKKLPLTGMELEEGMVVRWSEPECGNCELRGGDCGFRSNSSDEVVCFNLPKSGIPRGAKYGLIIGVGIPGLLFLIGLVFYICGKCKAFARPNRPTSNLSLSLGHEPTSTKAGLDGPTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHANCVDEWLKLNATCPVCRTSPDDSSATSTPSQSTSVSVSLPTSPRSLSRNDD* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4416124 4419240 - CsaV3_4G006580.1 Csa04g00658 526268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00658 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 363 IPR013083 -
Csa04g00658 393 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Csa04g00658 393 Pfam Wall-associated receptor kinase galacturonan-binding 25 94 IPR025287 GO:0030247
Csa04g00658 393 SMART ring_2 317 358 IPR001841 -
Csa04g00658 393 SUPERFAMILY RING/U-box 311 362 - -
Csa04g00658 393 Pfam Wall-associated receptor kinase C-terminal 184 224 IPR032872 -
Csa04g00658 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 367 - -
Csa04g00658 393 MobiDBLite consensus disorder prediction 275 311 - -
Csa04g00658 393 Pfam Ring finger domain 316 359 IPR001841 -
Csa04g00658 393 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 4 367 - -
Csa04g00658 393 CDD RING-H2_PA-TM-RING 316 359 - -
Csa04g00658 393 MobiDBLite consensus disorder prediction 362 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00658 - - - csv:101206642 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02587 Csa-Chr3:24407993 Csa04g00658 Csa-Chr4:4416124 1.04E-87 dispersed
Csa03g02588 Csa-Chr3:24417289 Csa04g00658 Csa-Chr4:4416124 2.64E-69 dispersed
Csa03g03507 Csa-Chr3:31398323 Csa04g00658 Csa-Chr4:4416124 1.73E-19 dispersed
Csa04g00658 Csa-Chr4:4416124 Csa06g02730 Csa-Chr6:23860220 1.09E-20 dispersed
Csa02g02342 Csa-Chr2:20811897 Csa04g00658 Csa-Chr4:4416124 2.40E-14 transposed
Csa03g00054 Csa-Chr3:492955 Csa04g00658 Csa-Chr4:4416124 9.05E-15 transposed
Csa06g00584 Csa-Chr6:5006071 Csa04g00658 Csa-Chr4:4416124 6.71E-22 transposed
Csa03g00809 Csa-Chr3:6971527 Csa04g00658 Csa-Chr4:4416124 8.37E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00658 Csa_Chr04 FPKM 0.0 0.0 6.343028 6.384887 3.982513 6.467524 4.018713 4.159781 3.677072 6.766939