Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00661 ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA 729 49.25 MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4447748 4449118 - CsaV3_4G006610.1 Csa04g00661 526271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00661 242 Pfam NAD(P)H dehydrogenase subunit S 166 217 IPR021659 GO:0009767
Csa04g00661 242 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 3 241 - -
Csa04g00661 242 MobiDBLite consensus disorder prediction 218 242 - -
Csa04g00661 242 MobiDBLite consensus disorder prediction 126 159 - -
Csa04g00661 242 Gene3D - 161 230 - -
Csa04g00661 242 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 3 241 IPR021659 GO:0009767
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00661 K00345 ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:7.1.1.-] - csv:101210548 471.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g137 Blo02g01151 . . Bda08g00464 Bpe05g00695 . . . . . . . . . . . . . . . . . . . Cla07g01099 Cam07g1399 Cec07g1261 Cco07g1241 Clacu07g1162 Cmu07g1142 Cre07g1523 . . Cone6ag0853 Cone9ag0854 . . . . . . . . . . Bma05g00877 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00661 Chy07g01150 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008625 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00661 Csa_Chr04 FPKM 15.164041 12.651786 10.562633 8.562881 7.768093 10.029684 9.241651 10.421811 9.726304 9.54866