Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00665 ATGATTCTGAACTTCACTTCACCATGCCTCACTCTCACTCGTCTCCCTCCTCCTAAACTCCTCGAACCACTCGCCTCTTCAACCAATGGCGCTACCGTTTTCATGCCTCTCCTTCTTTGTTCTCACGCTTTCTTTGCTTTCACCTCCTTCTCTAAGTCGTTGCGAGTTAGAACTTCTTTAAGTGGCAGCGACATCGACGGCTCTGCGGCTTTTGAGAATCCTGCTTCGGAGTTACTCGACGACGAGCTGATTGTAGTTGTTTCGGGTGCTAAGGATGCTGATGAAGCGCTAGGGATGATCGGTGATAAGTCAGGGAGAAGTGGAGGTACTGTGTCTGTTTCCGACTGTCGTTTGATTATTTCGGCTGCACTTAAGCGTAACAATCCCGAGCTTGCTTTGTCTGTGTTCTACGCAATGCGTTCCACTTTCTATCAAGCATGGGAAGGTGTTAATGAAAATGCTTCCATCGTTGAGAGATGGAAATGGTCAAGGCCAGATGTTCATGTATATACATTGCTGATTGAAGGTCTTGCAGCATCCTTGAGGGTATCTGATGCACTTAGAATGATCGAAATTATTTGCCGTGTTGGTGTAACACCTGCTGAGGAGGTACCATTTGGAAAAGTGGTGAAGTGTCCCAGTTGTATGGTAGCAGTTGCAGTTGCACAACCGCAGCATGGTATTCAGATTGTATCCTGTGCAAAGTGCTGCTACAAGTATGAACTTATTTCAGGAAACATAGTTAATATCGAGTCAGAAGAAATTCGCATGGATACTCCTGCATGGGAAAAAGCACTTCGGTTCTTGAACATAATGAAGCGAAAAATTCCTGTTGCTGTGCACTCCATTGTGGTACAAACTCCTTCTGGAGTGGCACGAACCCAGAAGTTTGCTACTGAAACAGCAGATCTCCCGGCTCGAGAGGGAGAAAGGGTGACAATTGCTGCTGCAGCTCCATCAAATGTATTCAGAGAAGTTGGTCCTATTAAATTTAGTCCAAAGGATCCCAATTTGTACTCTGGAGAGGCTATGTGCCTGACAAATCATTCAGATGGCCGGGAGTCACTATTATTAAGAGTGCCAGGAAAGGAAAACTCATCCTTACTTAACCCATCGATCCTCTTTCCACTCATAGTTTTGTCTGCCGCTGGAGATGCTGCCTCTGGAGTAATTGACCCCAGCTTGCCTCAGTTGCTTATAGTTGCTGGATTTGCTTCTCTAGCTGCAGGAGCTACCTTGAATTCATTAATTTTGCCTCAATTCAATCGGCTTCCTCAACGATCAGTTGATATCATTGCTATCAAGCAGCAACTTTTATCTCAATATAATGTGCTTCAGTCTCGTATCGGGGATTTAAAACTAGCTGCTGAAAAGGAGGTATGGATGTTGGCTCGGATGTGCCAATTGGAGAACAAAATTTTTGCCGTAGGAGAACCTTCTTACCGCGCACGTAGAAGTAGGATAAAAAAGGTGCGAGAAGGCTTGGAAAATTCCCTTAAGCAACGGATTGAACTAATCGAAAGCTATGCAAGGATTTCCTCGATGATTGAGATCGAAGTTGAAATGGAGTCTGATGTTATTGCAGCTGAAGCAGCTAGCAGTGTGGAAAGAGTGTCTGAACAGATAGAGCAAATCATGGTGCTGGAAAATCTAGAAGAGAGATGGAAATTACAAGCAGAAGCCAACGATGAAGCGGAAAGACTTCTCAACCAATCAATGCCAACAGAAAAGGTTTAG 1737 44.62 MILNFTSPCLTLTRLPPPKLLEPLASSTNGATVFMPLLLCSHAFFAFTSFSKSLRVRTSLSGSDIDGSAAFENPASELLDDELIVVVSGAKDADEALGMIGDKSGRSGGTVSVSDCRLIISAALKRNNPELALSVFYAMRSTFYQAWEGVNENASIVERWKWSRPDVHVYTLLIEGLAASLRVSDALRMIEIICRVGVTPAEEVPFGKVVKCPSCMVAVAVAQPQHGIQIVSCAKCCYKYELISGNIVNIESEEIRMDTPAWEKALRFLNIMKRKIPVAVHSIVVQTPSGVARTQKFATETADLPAREGERVTIAAAAPSNVFREVGPIKFSPKDPNLYSGEAMCLTNHSDGRESLLLRVPGKENSSLLNPSILFPLIVLSAAGDAASGVIDPSLPQLLIVAGFASLAAGATLNSLILPQFNRLPQRSVDIIAIKQQLLSQYNVLQSRIGDLKLAAEKEVWMLARMCQLENKIFAVGEPSYRARRSRIKKVREGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEERWKLQAEANDEAERLLNQSMPTEKV* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4466494 4473509 + CsaV3_4G006650.1 Csa04g00665 526275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00665 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Csa04g00665 578 Coils Coil 548 568 - -
Csa04g00665 578 Gene3D Tetratricopeptide repeat domain 78 277 IPR011990 GO:0005515
Csa04g00665 578 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00665 - - - csv:101209802 1081.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g142 . . Bda06g00150 . . Bpe07g00068 . . . . . . . . . Cpe14g00458 . . . . . . . . Cla07g01097 Cam07g1401 . Cco07g1239 . Cmu07g1140 . . . . . . . . . . . . . . . . Bma12g00611 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00665 Chy07g01147 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010485 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00665 Csa_Chr04 FPKM 6.809876 6.407017 4.664127 4.420874 3.803597 6.573895 7.40802 1.230115 2.328225 0.838404