Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00666 ATGCTTATGGCGAAATCTATTCTTGTCACCGGCGGTGCTGGCTACATTGGAAGCCACACTGTTCTTCAGCTCCTTCTCGGCGGTTACCGGGCCGTCATCGTTGATAATTTGGACAATTCCTCTGAAATTGCTGTTCGTCGAGTCAAGGAGCTCGCCGGCGATCTCGGCAAAAACCTTTCCTTTCATAAGCTGGACCTCAGGGACAAACGGGCTTTGGAGAAGGTGTTTGCTTCAACACCATTCGAGGCTGTTATTCACTTTGCTGGTCTGAAAGCAGTTGGTGAAAGTGTACAGAAACCATTACTTTACTATGACAACAACTTGGTTGGAACAATTACTTTATTGGAAGTCATGGCGGCCCATGGGTGTAAAAAGCTTGTCTTCTCGTCGTCAGCCACCGTATATGGTTGGCCGAAGGAGGTACCATGTACAGAAGAGTTTCCCCTTTCTGCAGCAAACCCGTATGGACGAACCAAGCTTCTCATAGAAGAAATCTGCCGTGACATATACCGTTCAGACTCTGAATGGAAAATCATATTGCTAAGATATTTCAATCCAGTGGGTGCCCACCCCAGTGGCTATATTGGTGAGGATCCCCGTGGAATCCCAAACAACCTCATGCCCTTTGTACAGCAAGTTGCTGTTGGCAGGCGTCCTGCCTTGACAGTCTATGGAACTGACTATTCAACAAAAGATGGAACCGGAGTACGTGATTATATTCATGTTGTTGATTTAGCTGATGGACACATTGCTGCATTGCGCAAGTTAGATGCGGCTGGTATAGGTTGTGAAGTTTACAATTTGGGAACTGGAAAGGGTACATCAGTCTTGGAGATGGTTTCAGCTTTTGAAAAAGCATCTGGAAAGAAAATTCCTCTTGTGACGTCTGCACGCCGACCTGGCGATGCTGAAATTGTATACGCATCGACATACAAAGCAGAAAAGGAGTTGAACTGGAAAGCAAAATATGGAATCGACGATATGTGTAAGGATCAGTGGAACTGGGCCAGCAAGAATCCTTACGGCTATGAACCCCCAAAATCTAACTAA 1050 46.0 MLMAKSILVTGGAGYIGSHTVLQLLLGGYRAVIVDNLDNSSEIAVRRVKELAGDLGKNLSFHKLDLRDKRALEKVFASTPFEAVIHFAGLKAVGESVQKPLLYYDNNLVGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLLIEEICRDIYRSDSEWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVYGTDYSTKDGTGVRDYIHVVDLADGHIAALRKLDAAGIGCEVYNLGTGKGTSVLEMVSAFEKASGKKIPLVTSARRPGDAEIVYASTYKAEKELNWKAKYGIDDMCKDQWNWASKNPYGYEPPKSN* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4479124 4483827 + CsaV3_4G006660.1 Csa04g00666 526276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00666 349 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 3 346 - -
Csa04g00666 349 CDD UDP_G4E_1_SDR_e 7 335 IPR005886 GO:0003978|GO:0006012
Csa04g00666 349 Gene3D - 7 276 - -
Csa04g00666 349 Gene3D - 195 336 - -
Csa04g00666 349 TIGRFAM galE: UDP-glucose 4-epimerase GalE 7 341 IPR005886 GO:0003978|GO:0006012
Csa04g00666 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 344 IPR036291 -
Csa04g00666 349 Pfam GDP-mannose 4,6 dehydratase 8 331 IPR016040 -
Csa04g00666 349 PANTHER UDP-GLUCOSE 4-EPIMERASE 3 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00666 K01784 galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2] - csv:101209558 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00666 Csa-Chr4:4479124 Csa05g00184 Csa-Chr5:1072871 0 dispersed
Csa04g00666 Csa-Chr4:4479124 Csa05g00316 Csa-Chr5:1968211 9.30E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g145 Blo02g01152 Blo03g00251 Bda06g00151 Bda08g00463 Bpe05g00696 Bpe07g00067 . . . . Cma02g00928 . Car02g00677 . . Cpe14g00457 . . . . . . . . Cla07g01096 Cam07g1402 Cec07g1259 Cco07g1236 Clacu07g1160 Cmu07g1139 Cre07g1520 . . Cone6ag0856 Cone9ag0858 . . . . . . . . . . Bma05g00878 Bma12g00612 . Cmo02g00937 . . . . . . . . . . . . . . . . . . . . . . Csa04g00666 Chy07g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002117 2 3 0 3 2 2 4 2 2 2 2 1 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 5 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00666 Csa_Chr04 FPKM 14.881234 15.680872 21.730436 20.540489 22.391876 21.32502 20.957327 24.253269 21.58939 21.625969