Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00667 ATGGAGAATCTCATCTCTCTTGTTAATAAAATTCAGAGGGCTTGTACGGCGCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTTTGGGACTCCTTGCCGGCTATCGCCGTCGTCGGTGGCCAAAGTTCGGGCAAATCTTCAGTGTTAGAAAGCATTGTCGGCAAGGATTTCTTACCCCGTGGATCTGGTATTGTTACTAGGCGTCCTCTTGTCTTGCAACTTCATAAAGGTGACGAAGGAAGCAGAGAGTACGCAGAGTTTCTCCACCTTCCCAGGAAAAAATTTTATGATTTTGTTGCTGTCAGGAAGGAAATTCAAGATGAGACAGATCGAGAGACTGGCCGCTCTAAACAAATTTCCAGTGTCCCAATTCATCTCAGTATATATTCTCCTAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTTACAAAAGTAGCTGTTGAGGGCCAACCAGAGAGTATTGTTCAAGAAATTGAAATGATGGTTCGCTCCTATATTGAAAAGCCTAATTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACGTCGGACGCAATTAAAATCTCTCGTGAAGTTGATCCAACTGGGGAGAGAACTCTTGGTGTCTTGACGAAGATTGATCTCATGGATAAGGGAACAGATGCTGTTGATATATTGGAAGGCAAAGCTTACAGGCTGAAGTTTCCTTGGGTTGGTGTTGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCAGCTAGGCGTAGGGAGCGTGACTATTTTGCTAGCACTTCGGAATACAAGCACCTCGCCCATAGGATGGGCTCTGAGCATCTAGCAAAGGTCCTTTCAAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCCGGCATTCAAAACCTTATTAACAAGACCATTTCAGAACTTGAATCCGAACTAAGCCGTCTTGGAAGGCCTGTTGCAAATGATGCTGGGGGAAAACTATACATGATTATGGAGATTTGTCGGGCTTTTGATCAGAATTTTAAAGAGCACCTTGATGGCGTGCGTCCTGGTGGTGATAAAATTTACAATGTCTTCGATGACCAACTTCCTGCTGCGCTGAAGAGGTTGCAGTTTGACAGGCAACTGTCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATAGCTCCTGAACAAGGATATCGTCGACTTATTGAATCTACTTTAGTTACTATTAGAGGCCCGGCTGAGGCATGTGTAGATGCGGTTCATGCCATATTGAAGGATCTGGTTCACAAAGCGATGGGTGAAACTCTAGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGGTAGGAAACGCAGCTATTGAATCCCTGGAAAGAATGAGGGAGCAAAGCAAAAAGGCGTCTCTTCAGCTTGTGGATATGGAGTGTAGCTACCTGACTGTTGATTTCTTCCGGAAGCTTCCTCAAGATATTGAAAAGGGAGGCAACCCTACACATTCAATTTTTGACCGATACAATGACTCATATCTAAGGCGTGTTGGAACAACGGTGCTATCTTATGTCCATATGGTTTGTGCAAGCTTACGGAACTCGATTCCCAAGTCCATTGTTTATTGTCAAGTACGAGAAGCCAAAAGAAGCCTCCTCGATCACTTTTTCACTGATTTGGGAAAACTAGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATCATGGAACGACGTAGTGCCCTAGCAAAGAGGCTCGAGTTATACAGAAGTGCACAAGCAGAAATCGACACAGTTGCTTGGTCAAAGTAA 1833 43.54 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKGDEGSREYAEFLHLPRKKFYDFVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIEMMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRERDYFASTSEYKHLAHRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAEACVDAVHAILKDLVHKAMGETLELKQYPGLRVEVGNAAIESLERMREQSKKASLQLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTDLGKLEQKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDTVAWSK* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4484581 4492271 + CsaV3_4G006670.1 Csa04g00667 526277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00667 610 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Csa04g00667 610 ProSiteProfiles GED domain profile. 518 610 IPR020850 -
Csa04g00667 610 CDD DLP_1 33 300 IPR001401 GO:0003924|GO:0005525
Csa04g00667 610 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 609 - -
Csa04g00667 610 SMART dynamin_3 1 251 IPR001401 GO:0003924|GO:0005525
Csa04g00667 610 Gene3D Dynamin, middle domain 331 586 - -
Csa04g00667 610 Coils Coil 465 485 - -
Csa04g00667 610 Pfam Dynamin central region 221 488 IPR000375 -
Csa04g00667 610 Pfam Dynamin GTPase effector domain 514 606 IPR003130 GO:0003924|GO:0005525
Csa04g00667 610 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 300 IPR030381 GO:0005525
Csa04g00667 610 Gene3D - 1 309 IPR027417 -
Csa04g00667 610 PRINTS Dynamin signature 34 52 IPR022812 -
Csa04g00667 610 PRINTS Dynamin signature 59 76 IPR022812 -
Csa04g00667 610 PRINTS Dynamin signature 132 149 IPR022812 -
Csa04g00667 610 PRINTS Dynamin signature 182 200 IPR022812 -
Csa04g00667 610 PRINTS Dynamin signature 201 217 IPR022812 -
Csa04g00667 610 PRINTS Dynamin signature 224 243 IPR022812 -
Csa04g00667 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 308 IPR027417 -
Csa04g00667 610 SMART GED_2 513 606 IPR003130 GO:0003924|GO:0005525
Csa04g00667 610 Pfam Dynamin family 37 213 IPR045063 -
Csa04g00667 610 PANTHER DYNAMIN 2 609 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00667 - - - csv:101209311 1191.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00667 Csa-Chr4:4484581 Csa05g02002 Csa-Chr5:23302089 0 dispersed
Csa07g00505 Csa-Chr7:3631639 Csa04g00667 Csa-Chr4:4484581 5.08E-13 dispersed
Csa04g00667 Csa-Chr4:4484581 Csa03g01036 Csa-Chr3:8335002 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00667 Csa_Chr04 FPKM 2.254847 3.498863 2.183743 2.142056 1.578088 1.804863 1.080266 1.761798 1.643485 1.576072