Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00677 ATGGCTAATCGGGGTGGAGGGTCGCTTTTACCCTCAAGTAGTACTTCGATTCAAGGTTGGTGTGGAGATGAACTTTATACTGAGCTATGGAAGGTCTCGGCTGGACCTCTTGTGGAAATTCCTCGAATTAATGAGAAGGTTTTATATTTTCCTCAAGGCCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTGTTTAATCTTCCCCCCAAAATTCTTTGTCAAGTAGTTGATACCCGGCTGCTGGCTGAGCAGGATTCAGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCTAATCAAGCGCTACCTTCAACTTTTGAACCTCCACTAATAGAGTGTCGAAAAACAAAAGTCCATTCGTTTTGCAAGGTTCTAACTGCTTCTGATACTAGCACCCATGGAGGGTTCTCCGTGCTTCGGAAACATGCCACAGAATGTCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGAAGGCATTTGCTGACAACCGGATGGAGCACCTTTGTGACTTCTAAGAGACTGGTTGCTGGAGATTCTTTTGTTTTCTTGAGGGGGGAAAATGGAGAATTGCGAGTTGGAGTAAGGCGTCTTGCTCGCCAACAAAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCGACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAGTAAGTACATGGAAGCGATGAACAATAAGTTCATGGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGTGAGGAGTCTCCTGAGAGAAGGTTTTCGGGTACCATAGTCGGAGTTGACGACATGTCTCCTCACTGGCCCAATTCAGAATGGCGATCGCTGAGAGTTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGGGTTTCACCATGGGAGATTGAACCTTTCGTAGCTCCTACACCGAGCATTCCGCATTCTATTTCAGTAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCCAGATTCCGATAATTCAACTGTAACAACTCTACGACATCCTGGATCAACATCACATGATGATAGAACACAGCTGAGTGTTTCTGCTGCTGAACTTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACAGATGCTGGCGGCAATGGAAATTCTGTATCAAGGACTGCAATGGAGGGATCTTGGTTAGCATCCTCAAGTGGCTGTGTTTCTCAGCATCGGTTACAGGATTTGATAGATGACCGTAAAAGTGGTTCTGTTTGGTCAACGGTCTTTCCAGGACAGCTGGCAGCACACTCAACATGTCCAACTCCACGGTCTTCAAATACGAAGAGTGACCAAGTACAGGACCTTGGGGAAAAGGGGAAGAAAGCTGAGGCGTCTCCAAGCTGTCGGTTGTTTGGGATTGAGCTCATCAATCATTCTAAGAGCCCAGTTCTGACCGAAAGAGCGGCTGATCAACCAAATAGCACACCAAATGAAATCACTGAGGCAGAGCAGAACTCAAACCTACCAAAGATTTCCAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACCAAGGTTCAAATGCAGGGGATGGCCGTTGGACGGGCAGTGGACCTTACCACATTGGAGGGTTATGGCCAACTCATTGATGAATTGGAAAAAATGTTTGATATCAAGGGAGAACTTCGTCCTCGTAACAAGTGGGAGATTGTTTTCACCGACGACGAAGGAGATATGATGCTCATGGGCGATTACCCTTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAGGATGTGAAGATGGGTTCGGTTAGCAAACTTGCGATGTCTGCACTCGAATGTGAAGGCACAGTAATAACCTCGGAGTCGGCTGACAGCTGA 2091 45.67 MANRGGGSLLPSSSTSIQGWCGDELYTELWKVSAGPLVEIPRINEKVLYFPQGHMEQLEASTNQELNQKLPLFNLPPKILCQVVDTRLLAEQDSDEVYAQITLMPEANQALPSTFEPPLIECRKTKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLSKYMEAMNNKFMVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWPNSEWRSLRVQWDELASIQRPDRVSPWEIEPFVAPTPSIPHSISVKNKRPRPPLEIPDSDNSTVTTLRHPGSTSHDDRTQLSVSAAELKRFENHATWHYKQTDAGGNGNSVSRTAMEGSWLASSSGCVSQHRLQDLIDDRKSGSVWSTVFPGQLAAHSTCPTPRSSNTKSDQVQDLGEKGKKAEASPSCRLFGIELINHSKSPVLTERAADQPNSTPNEITEAEQNSNLPKISKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDMMLMGDYPWQEFCNMVRRIYIWSSQDVKMGSVSKLAMSALECEGTVITSESADS* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4565178 4570274 + CsaV3_4G006770.1 Csa04g00677 526287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00677 696 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Csa04g00677 696 SMART B3_2 130 232 IPR003340 GO:0003677
Csa04g00677 696 MobiDBLite consensus disorder prediction 481 499 - -
Csa04g00677 696 Gene3D - 580 672 - -
Csa04g00677 696 SUPERFAMILY CAD & PB1 domains 579 661 - -
Csa04g00677 696 Gene3D - 127 231 IPR015300 -
Csa04g00677 696 Pfam Auxin response factor 256 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa04g00677 696 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Csa04g00677 696 Gene3D - 291 362 - -
Csa04g00677 696 ProSiteProfiles PB1 domain profile. 585 666 IPR000270 GO:0005515
Csa04g00677 696 MobiDBLite consensus disorder prediction 384 405 - -
Csa04g00677 696 Pfam AUX/IAA family 556 621 IPR033389 -
Csa04g00677 696 Pfam AUX/IAA family 632 668 IPR033389 -
Csa04g00677 696 PANTHER AUXIN RESPONSE FACTOR 9 20 683 - -
Csa04g00677 696 MobiDBLite consensus disorder prediction 481 510 - -
Csa04g00677 696 MobiDBLite consensus disorder prediction 534 554 - -
Csa04g00677 696 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Csa04g00677 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa04g00677 696 CDD B3_DNA 128 230 IPR003340 GO:0003677
Csa04g00677 696 MobiDBLite consensus disorder prediction 364 405 - -
Csa04g00677 696 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00677 Csa-Chr4:4565178 Csa05g00191 Csa-Chr5:1127742 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31517 PF02309 AUX_IAA 1.00E-06 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00677 K14486 - csv:101213942 1394.02