Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00684 ATGACCGAGCCGGATTCCGATCACCCGTCTCCCCTTTTCCCCAAATCTAACCACCGTTCTTCTTCCGACGACCGTACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGGTTCTAATCCCATGTCCCCTTTTCTCCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGATGATGATGATTCTAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCTGTACCGCAAAAGCCGACGGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCGTCTTCGTCATGGGGAGTACTGCCATCAGAGAATCCAGATGGGTATTGCTTAATCAAAGAGAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAAGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTGGTACTTTCAACTTCCGGGCAACCGTTTTTCCTTGATTCACAGAGCAATGGACTGCATCAATATAGGATGGCCTCTTTGACGTTTTCCTTTTCCTTGGACGCCGACCAGGATGGATATCTTGGGCTCCCTGGTCGTGTTTTCCAACAAAAATTGCCAGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCTCGACTTAGTCACGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTTGACCCTTCCGGCCACTCTTGTCTTGGTGTTCTTGAGCTAATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTAGACAAAGTCTGCAAAGCTCTTGAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATAATCAGATTTGCAATGAAGGTCGTCAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCAACGGTGGAGGTTTGAAGAAAAGTTGTACAAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCAGGGAGAGCGTTTTTATCTCACAGCTCATGTTTTTGTGGAGACGTCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGGTTGAAGAGTTGTTTTTCAATCTGTTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTACCAGGAACAAAAGAATTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAATCTTGAGGACAAGGAAGGACTTGTTGAGATCATTCAAGCATCTAGAAATGGAGGATTTGACTCGAGATTTGAATATATTCAAATTCCGCGACCCGTGCAATTGCCACCTGCATCTGATGCCATGCCAAAAGCAGTAGAGGTAGCTGCATTAGAAACATTGGAACAACAATCTTTAATGGTTCATGATGCTCCGAAGGATGAAAACAATGGTGCTTGGGACGGGGAAAGCCACAAGTCCGTTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACATCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTACAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGTGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTCAATCGTTCACTTTCAAAACTAAAACGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTACTGTTAGCTCAAGTTCTCATCCTTTAACTCCAGAAGGGTCTAACCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCCCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCGATTACATAGAGGAGTGTTGAGTCCAGAAGAACCAATTCACGAACAGAATGGATTTCTGCCAAAGTTTGGAAATGGTTTGAACAATTTTAGAACAGGAAGCGGATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCAGCAAACGACAGTGCACTAGCAAATAATCCGATTTCTATTCGTCAGCATGAACAATGTGCAAGAAGAGAATCTCCTGAAGTAGCATTCCATCCAATCGATAAACTGAATATATCGGCGCCTCCTTGTTCAATCCCGGATACACTTGTGATGGTAGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAGGACTTGAAAAATCTTTGTGCTTCTGTCGCGGATGCTGTTCTTGATGAGCAAGTACCCGAATTTTGTTGGTCCAACCATCATGATATAGCTCTGAGACAACCTATGGACTCTGTTTGTCACACAGTCCCTCATATATCATTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGACTTCTGGTATTGTGGAGTTGAGAGAAGAAGTGGCAAAGAGACTGAAACTGGAGGTTGGTACGTTTGATATCAAATATATGGATGACGATCGTGAATGGGTTCTTATTGCGTGTGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAGTCGTCAGGTAGCAATATCATAAGATTGTCAGTTCATGATTTAAATGTCAATCTTGGGAGTTCTTGTGAGAGTACTGGTGGGGAGTGA 2982 43.7 MTEPDSDHPSPLFPKSNHRSSSDDRTPLMDFDLDLDIPWPLDQIPSFGSNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLGTSNSHSVPQKPTENQKFKILPVPSSSWGVLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFFLDSQSNGLHQYRMASLTFSFSLDADQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDVTQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKNLLGALMATMKKHFYTLKVASGINLEDKEGLVEIIQASRNGGFDSRFEYIQIPRPVQLPPASDAMPKAVEVAALETLEQQSLMVHDAPKDENNGAWDGESHKSVPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTPEAQTNDTQARLEDRLHRGVLSPEEPIHEQNGFLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIRQHEQCARRESPEVAFHPIDKLNISAPPCSIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNHHDIALRQPMDSVCHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLTSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDLNVNLGSSCESTGGE* 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4646625 4651248 + CsaV3_4G006840.1 Csa04g00684 526294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00684 993 MobiDBLite consensus disorder prediction 730 782 - -
Csa04g00684 993 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 22 991 - -
Csa04g00684 993 MobiDBLite consensus disorder prediction 673 717 - -
Csa04g00684 993 Pfam RWP-RK domain 592 640 IPR003035 -
Csa04g00684 993 Pfam PB1 domain 898 978 IPR000270 GO:0005515
Csa04g00684 993 MobiDBLite consensus disorder prediction 748 782 - -
Csa04g00684 993 PANTHER PROTEIN NLP8 22 991 IPR045012 GO:0003700
Csa04g00684 993 Gene3D - 895 978 - -
Csa04g00684 993 MobiDBLite consensus disorder prediction 673 714 - -
Csa04g00684 993 ProSiteProfiles PB1 domain profile. 897 979 IPR000270 GO:0005515
Csa04g00684 993 MobiDBLite consensus disorder prediction 553 589 - -
Csa04g00684 993 SMART PB1_new 897 979 IPR000270 GO:0005515
Csa04g00684 993 MobiDBLite consensus disorder prediction 570 589 - -
Csa04g00684 993 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Csa04g00684 993 CDD PB1_NLP 898 978 IPR034891 -
Csa04g00684 993 SUPERFAMILY CAD & PB1 domains 891 979 - -
Csa04g00684 993 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00684 - - - csv:101212500 2007.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00255 Csa-Chr4:1576395 Csa04g00684 Csa-Chr4:4646625 1.07E-147 dispersed
Csa04g00684 Csa-Chr4:4646625 Csa06g02013 Csa-Chr6:18136074 3.56E-08 dispersed
Csa06g03401 Csa-Chr6:28169355 Csa04g00684 Csa-Chr4:4646625 6.43E-06 dispersed
Csa07g00183 Csa-Chr7:1488854 Csa04g00684 Csa-Chr4:4646625 6.95E-06 dispersed
Csa04g00684 Csa-Chr4:4646625 Csa04g02701 Csa-Chr4:26143290 3.19E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g00684 . 186 990 NLP Transcription Factor Family AT1G64530 51.8 1.4e-216 749.6
Csa04g00684 . 265 991 NLP Transcription Factor Family AT4G24020 54.8 1.4e-200 696.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31518 PF00564 PB1 4.80E-19 CL0072 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00684 Csa_Chr04 FPKM 4.546296 3.770101 4.198906 2.877325 5.304846 3.183012 3.225507 5.686722 4.610841 4.503216