Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00686 ATGCCTGGTTTGGTTTCCGTCAAAACCCCGCCGGACGCCCCCCCTCTCCGGATCTCTGTCCCCGAAACACCCCCCGCATCCAATCACCGACCCCCATCTCCTCTAACCAAGAAACAACCCTCTCCTTCTCCTTCTCGATCCAAGCCTTCACCTAACGGGAAGAAGAAGCTTCAACCGGAGAGCCCCACCTCGGCCCAATTTCCGCCGGATTCTTCTCTTGACAACCCCGATCTTGGCCCTTTTCTTCTCAAGCTTGCCCGTGACACTATCGCCTCCGGTGATGGCCCCAATAAAGCCTTAGATTACGCTATCCGAGCATCGAAGTCGTTTGAGCGATGCGCTGTGGATGGTGAACCGAGCTTGGATTTGGCTATGAGTCTTCATGTTCTGGCTGCTATTTATTGTAGCTTGGGCCGTTTTGAGGAGGCGGTGCCGGTTCTTGAACAGGCGATTCAAGTTCCTGAGATTGGAAGAGGTCCGGATCATGCTCTTGCTGCTTTTTCTGGACATATGCAACTGGGTGATACGTATTCGATGCTGGGTCAGATCGAGCGGTCGATTGGTTGTTATGAAGAGGGCTTGAAGATTCAGATCGAGGCCTTGGGAGAGACGGATCCCAGAGTTGGGGAGACTTGCAGGTATTTATCTGAGGCGCACGTTCAAGCAATGCAGTTTGATAGAGCGGAACAATTGTGCAAGAAAACTCTTGAGATTCACCATGCACATAGTGAGCCTGCGTCACTTGAAGAAGCAGCTGACCGTCGTCTGATGGCGCTCATTTGTGAAGCAAAAGGTGACTATGAATCGGCACTTGAGCACCTTGTGCTGGCTAGTATGGCAATGATCGCTAATGGGCAAGACAGTGAGGTTGCTGCTATTGATGTGAGTATTGGAAATATTTACATGTCTCTATGTCGTTTTGATGAGGCAGTTTTCTCGTACCAAAAGGCTCTCACTGTATTCAAAGCATCTAAGGGTGACAACCATCCTTTGGTTGCCTCTGTCTTCATACGACTTGCCGACTTATATCACCGGACTGGAAAGCTCCGGGAGTCCAAATCTTATTGCGAAAATGCAATGAGGATATACTCAAAGCCTGTGCCTGGAACTTCACCCGAAGAAATAGCTGGTGGGTTGACTGAAATATCAGCAATTTACGAGTCTGTTGACGAGCCCGAGGAGGCATTGAAGCTCTTGCAGAAGGCAATGAAGATGTTGGAAGATAAACCTGGACAGCAAAGCACAATTGCTGGGATAGAAGCACGGATGGGAGTGATGTTTTACATGGTTGGAAGGTACGAAGACGCAAGAAATGCTTTCGAGAGTGCGATATCGAAACTCAGAGCCACTGGGGAGAGAAAATCTGCATTCTTTGGTGTTGTGTTGAATCAAATGGGATTGGCCTGTGTGCAGTTGTTCAAGATAGATGAAGCTGCAGAGTTGTTTGAAGAAGCAAGAGGAATTTTAGAGCAAGAGTGTGGCAACTGTCATCAAGATACCATTGGAGTATATAGCAACCTTGCCGCAACCTATGATGCTATGGGAAGAGTCGATGATGCTATCGAAATATTGGAATCAGTTCTTAAGTTGAGAGAAGAGAAGCTTGGAATTGCAAATCCGGATTTTGAGGATGAAAAGAGGAGACTGGCTGAACTACTGAAGGAAGCAGGCCGAACCCGAAACCGGAAAGCAAAGTCTCTGGAAAATCTCATTGACCCGAACTCAAGGAAAACAAAGAAAGAGGCAACAAAGAAGTGGTCGGGCTTGGGATTTAGAATTTGA 1782 47.98 MPGLVSVKTPPDAPPLRISVPETPPASNHRPPSPLTKKQPSPSPSRSKPSPNGKKKLQPESPTSAQFPPDSSLDNPDLGPFLLKLARDTIASGDGPNKALDYAIRASKSFERCAVDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIQVPEIGRGPDHALAAFSGHMQLGDTYSMLGQIERSIGCYEEGLKIQIEALGETDPRVGETCRYLSEAHVQAMQFDRAEQLCKKTLEIHHAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDSEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPLVASVFIRLADLYHRTGKLRESKSYCENAMRIYSKPVPGTSPEEIAGGLTEISAIYESVDEPEEALKLLQKAMKMLEDKPGQQSTIAGIEARMGVMFYMVGRYEDARNAFESAISKLRATGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGNCHQDTIGVYSNLAATYDAMGRVDDAIEILESVLKLREEKLGIANPDFEDEKRRLAELLKEAGRTRNRKAKSLENLIDPNSRKTKKEATKKWSGLGFRI* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4664633 4667762 - CsaV3_4G006860.1 Csa04g00686 526296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00686 593 SMART tpr_5 291 324 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 333 366 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 209 242 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 124 157 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 417 450 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 501 534 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 459 492 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 167 200 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 376 409 IPR019734 GO:0005515
Csa04g00686 593 SMART tpr_5 251 284 IPR019734 GO:0005515
Csa04g00686 593 MobiDBLite consensus disorder prediction 564 583 - -
Csa04g00686 593 MobiDBLite consensus disorder prediction 1 79 - -
Csa04g00686 593 Gene3D Tetratricopeptide repeat domain 170 278 IPR011990 GO:0005515
Csa04g00686 593 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Csa04g00686 593 Gene3D Tetratricopeptide repeat domain 279 458 IPR011990 GO:0005515
Csa04g00686 593 Gene3D Tetratricopeptide repeat domain 459 587 IPR011990 GO:0005515
Csa04g00686 593 Pfam Tetratricopeptide repeat 290 364 - -
Csa04g00686 593 Pfam Tetratricopeptide repeat 461 533 - -
Csa04g00686 593 SUPERFAMILY TPR-like 127 537 IPR011990 GO:0005515
Csa04g00686 593 Coils Coil 389 409 - -
Csa04g00686 593 Coils Coil 542 562 - -
Csa04g00686 593 MobiDBLite consensus disorder prediction 14 47 - -
Csa04g00686 593 Gene3D Tetratricopeptide repeat domain 71 169 IPR011990 GO:0005515
Csa04g00686 593 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Csa04g00686 593 MobiDBLite consensus disorder prediction 48 71 - -
Csa04g00686 593 PANTHER - 1 592 - -
Csa04g00686 593 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 592 - -
Csa04g00686 593 Pfam MalT-like TPR region 128 279 IPR041617 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00686 - - - csv:101207194 1149.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00154 Csa-Chr1:986550 Csa04g00686 Csa-Chr4:4664633 0 dispersed
Csa04g00686 Csa-Chr4:4664633 Csa06g00878 Csa-Chr6:7057120 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00686 Csa_Chr04 FPKM 8.132497 8.715355 26.611633 26.413157 102.70153 79.259613 90.001678 8.840621 9.635606 8.899701