Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00690 ATGGCGGCTACTCCTCACCAACACCAATGGAGCGAGGAGGAGACGAGGGAGTTCATTCGTATTCGAGCCGACCTAGAGAAGGACCTCGCCGCGGTTTCCATCGGAGAAGCTCCGGCGGCGAAGAAGAAAACTTTGTGGGAGATGGCGAGTGTTAGGATGCGAGAGAAAGGGTTTTGGAGGACCGCCGATCAGTGCAAATGCAAGTGGAAGAATCTCCTCAGCCGCTACAAGGGGAAGGAGACATCTCATAAGGAGTATGGATGGCAATGCCCATTTTTTGAAGAAATCCATGCAGTTTTTACAGAAAGAGGAAAAGCTATGCACCGACTGCTCCTCGAACCTGAAGCATGTTCTATTTCAACAAAGAAAAGGGGGAGGGAAAGAAGTTTAGAAGAACATTCAGACCTCAAAGAACTCAATGAAGACGAAAATGAGGAGGAGGTGACTTTCACTCAAAGCAACTCACAGAAGAGAAAGGCTGCAAGAAAACTCCCAGCAAAGTCTTTGGGAGCAACTGATTCTAAAAGTTCTAGTAGCTCAACTAGTAATGAAATTCAAGAAATGTTGAAGGGCTTCTTTCAATGGCAGCAGAGGATGGAGATGGAATGGAGGGAAATAGTTGAGAGACATTACAACAACCGTCGAATGTTTGAGCAGGAATGGCGTGAGTCAATGGAGAAGCTTGAGAGGGAGAGGTTAATGGCTGAGCAAGCTTGGAGGGAAAGGGAAGAACAGAGAAAGGAAAGGCAAGATATCCGAGCTGAAGGAATGAATGCCCTCTTAACAACCCTTTTAAACAAGCTCAACCACGAAAATAATTTATGA 825 46.06 MAATPHQHQWSEEETREFIRIRADLEKDLAAVSIGEAPAAKKKTLWEMASVRMREKGFWRTADQCKCKWKNLLSRYKGKETSHKEYGWQCPFFEEIHAVFTERGKAMHRLLLEPEACSISTKKRGRERSLEEHSDLKELNEDENEEEVTFTQSNSQKRKAARKLPAKSLGATDSKSSSSSTSNEIQEMLKGFFQWQQRMEMEWREIVERHYNNRRMFEQEWRESMEKLERERLMAEQAWREREEQRKERQDIRAEGMNALLTTLLNKLNHENNL* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4691367 4693675 + CsaV3_4G006900.1 Csa04g00690 526300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00690 274 PANTHER - 8 272 - -
Csa04g00690 274 CDD GT1 9 80 - -
Csa04g00690 274 Pfam Myb/SANT-like DNA-binding domain 8 98 IPR044822 -
Csa04g00690 274 ProSiteProfiles Myb-like domain profile. 10 73 IPR001005 -
Csa04g00690 274 PANTHER - 8 272 - -
Csa04g00690 274 MobiDBLite consensus disorder prediction 122 137 - -
Csa04g00690 274 Gene3D - 10 78 - -
Csa04g00690 274 Coils Coil 126 146 - -
Csa04g00690 274 Coils Coil 218 245 - -
Csa04g00690 274 MobiDBLite consensus disorder prediction 122 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00690 - - - csv:101206472 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00690 Csa-Chr4:4691367 Csa04g01622 Csa-Chr4:15600258 1.22E-23 dispersed
Csa04g00690 Csa-Chr4:4691367 Csa03g03064 Csa-Chr3:28871011 7.08E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00526 . . . . . . . . . . . . . . . . Csa04g00690 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013839 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31519 PF13837 Myb_DNA-bind_4 1.70E-16 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00690 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0