Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00692 ATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGATTCTTCACGTTCTACTTCTTTGTATGGCAATGAATAAAAGCACTGGCCTCACACCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTTCAGTGGAGACCAGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACAAAGAGAGTAATCTCATTGAAACTTGCAAGTCACAAACTGAGTGGATTCATTGCTCCTGAACTTGGGAAACTAGACCAATTGAAGACCCTGATTCTTTCAGACAACAATTTATACGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTCATTCCCTATGAGCTGGGAAACCTTTTAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCACTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATCCTCAATGTGTCTTCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACCTCCTTTGTCGGAAATCGTGGTTTGTGTGGGAAACAAGTTAACGTTGTTTGCAAAGACGATAATAACGAATCTGGAACAAATTCTGAGTCCACAAGCTCAGGCCAAAATCAAATGAGAAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAACGATTTGGCAAAAATGACAAGAAAGGTCTTGCGAAGGATGTTGGTGGAGGTGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGCTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGCTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCCTATTTGCACCACGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTACTTGATGGTAATCTGGACGCTCGAGTTTCTGACTTTGGACTTGCAAAGCTTCTGGATGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATATATGCAAAGTGGTAGGGCAACGGAAAAGACTGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGTCCTACGGATGCATCATTTATTGAAAAAGGCCTGAACATTGTTGGCTGGCTAAACTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTACAATCGGAAACACTTGACTCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCAACCATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACGCCATGCCCAAGTGACTTCGATGATTCCAATTCCGATTAA 1788 42.11 MGICLVKCSGLLILHVLLLCMAMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLILSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPYELGNLLELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVNVVCKDDNNESGTNSESTSSGQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLAKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDSLLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4698595 4707936 - CsaV3_4G006920.1 Csa04g00692 526302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00692 595 Gene3D Ribonuclease Inhibitor 30 216 IPR032675 -
Csa04g00692 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Csa04g00692 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Csa04g00692 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 595 IPR031071 GO:0004672|GO:0005524|GO:0030244
Csa04g00692 595 SUPERFAMILY L domain-like 30 193 - -
Csa04g00692 595 Gene3D Phosphorylase Kinase; domain 1 285 385 - -
Csa04g00692 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00692 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00692 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Csa04g00692 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Csa04g00692 595 PANTHER RECEPTOR-LIKE PROTEIN 55 3 595 - -
Csa04g00692 595 SMART serkin_6 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00692 595 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
Csa04g00692 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00692 Csa-Chr4:4698595 Csa04g02769 Csa-Chr4:26547824 0 dispersed
Csa04g00692 Csa-Chr4:4698595 Csa01g00213 Csa-Chr1:1379747 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78124 PF00069 Pkinase 1.90E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00692 - - csv:101205992 1174.07