Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00694 ATGGTGGCTACCATTTCCATCTTCTTCCACCTAATTCTCTTATTGATCTCCTTCTCTCAAACAACCATTATTAACGGTGATAATGGCTTCACCACCTCTCTCTTCCACCGTGATTCCCTTCTTTCCCCTCTTGAATTTTCATCTCTATCTCATTACGATCGCCTCACCAATGCCTTTCGCCGCTCATTGTCTCGCTCCGCTACTCTCCTCAATCGCGCTGCCACTAATGGTGCTCTTGACCTCCAAGCCCCACTTACCCCAGGAAGTGGCGAGTATCTAATGTCTGTCTCTATTGGAACCCCACCAGTTGATTACATAGGCATGGCTGACACAGGCAGTGATCTGATGTGGGCTCAATGCTTGCCATGTCTGAAATGCTACAAACAATCACGTCCCATTTTCGACCCTCTCAAATCCACATCCTTCAGTCACGTGCCATGCAATTCACAAAATTGTAAAGCTATTGATGATTCCCATTGTGGGGCTCAGGGGGTTTGCGATTACAGTTACACGTACGGAGATCAAACTTACACAAAGGGGGATTTGGGATTTGAAAAGATCACCATTGGGTCATCTTCTGTGAAATCAGTCATCGGATGTGGCCATGAGAGTGGTGGCGGATTTGGGTTTGCTTCAGGTGTCATTGGACTTGGTGGTGGTCAACTCTCGTTGGTCTCACAAATGAGCCAAACCTCCGGTATCAGCCGTCGATTCTCTTATTGCTTACCAACGTTACTCAGTCACGCAAATGGCAAAATAAACTTTGGCCAAAACGCTGTGGTTTCTGGCCCTGGAGTCGTTTCAACGCCACTGATCTCCAAAAACCCCGTCACTTACTATTACGTCACTTTGGAAGCCATTTCCATTGGCAACGAACGTCACATGGCCTCTGCCAAACAAGGCAATGTGATTATCGACAGTGGGACGACATTATCGTTTCTTCCAAAGGAGTTGTATGATGGTGTCGTGTCGTCGCTACTCAAGGTTGTTAAAGCAAAGCGAGTGAAGGATCCCGGTAATTTTTGGGATCTATGCTTTGATGATGGCATCAACGTCGCCACCTCCTCTGGTATTCCGATTATCACTGCACAATTTTCCGGTGGCGCTAACGTGAATTTGTTGCCAGTGAATACGTTTCAGAAGGTGGCAAATAATGTGAATTGCTTAACATTAACACCTGCATCACCGACAGACGAATTTGGGATAATTGGAAATTTGGCGCTGGCCAATTTTTTGATCGGATATGATTTGGAGGCTAAGAGATTATCATTCAAGCCAACCGTTTGTACCTAG 1293 46.09 MVATISIFFHLILLLISFSQTTIINGDNGFTTSLFHRDSLLSPLEFSSLSHYDRLTNAFRRSLSRSATLLNRAATNGALDLQAPLTPGSGEYLMSVSIGTPPVDYIGMADTGSDLMWAQCLPCLKCYKQSRPIFDPLKSTSFSHVPCNSQNCKAIDDSHCGAQGVCDYSYTYGDQTYTKGDLGFEKITIGSSSVKSVIGCGHESGGGFGFASGVIGLGGGQLSLVSQMSQTSGISRRFSYCLPTLLSHANGKINFGQNAVVSGPGVVSTPLISKNPVTYYYVTLEAISIGNERHMASAKQGNVIIDSGTTLSFLPKELYDGVVSSLLKVVKAKRVKDPGNFWDLCFDDGINVATSSGIPIITAQFSGGANVNLLPVNTFQKVANNVNCLTLTPASPTDEFGIIGNLALANFLIGYDLEAKRLSFKPTVCT* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4708709 4710001 - CsaV3_4G006940.1 Csa04g00694 526304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00694 430 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 5 430 - -
Csa04g00694 430 Pfam Xylanase inhibitor N-terminal 92 257 IPR032861 -
Csa04g00694 430 PANTHER OS07G0603500 PROTEIN-RELATED 5 430 - -
Csa04g00694 430 Gene3D Acid Proteases 71 257 IPR021109 -
Csa04g00694 430 CDD pepsin_A_like_plant 91 429 IPR034161 -
Csa04g00694 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 303 314 IPR001969 GO:0004190|GO:0006508
Csa04g00694 430 PRINTS Pepsin (A1) aspartic protease family signature 98 118 IPR001461 GO:0004190|GO:0006508
Csa04g00694 430 PRINTS Pepsin (A1) aspartic protease family signature 303 314 IPR001461 GO:0004190|GO:0006508
Csa04g00694 430 PRINTS Pepsin (A1) aspartic protease family signature 401 416 IPR001461 GO:0004190|GO:0006508
Csa04g00694 430 SUPERFAMILY Acid proteases 86 429 IPR021109 -
Csa04g00694 430 Pfam Xylanase inhibitor C-terminal 280 425 IPR032799 -
Csa04g00694 430 Gene3D Acid Proteases 261 430 IPR021109 -
Csa04g00694 430 ProSiteProfiles Peptidase family A1 domain profile. 92 425 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00694 - - K01381 csv:101206570 794.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00694 Csa-Chr4:4708709 Csa04g00696 Csa-Chr4:4716169 3.99E-147 dispersed
Csa04g00694 Csa-Chr4:4708709 Csa04g00695 Csa-Chr4:4712922 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00694 Csa_Chr04 FPKM 33.15406 40.130527 3.782243 4.552109 21.53956 16.448385 20.875143 2.407254 1.752301 2.467124