Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00707 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGCCGGAGACTCTCTCCTGTTCTGGGAGAATCCGGCGGGGGAGATCCAAAGGCCGGAGAGTTTTTCAGTCTGCTTGCCTTGGTACCTCCTCTGGATCGCACCATAGCGACAATGACGATAATGATTCTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTACAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGCTACAGAAGGGTAAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCGAATGCTACACTTAATGGATGGGATCAAGCAGGTGTTGCTGTTACAGCCCCCAGAGCTGGAAGCACCTCTGCTCGTGTATCTTCCCTGCAATCGTTGAACACTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTTAGACTTAGTAGAGCAAGCAGCTTAGGATCATCTAGATCTTATCCTGTGTCTTCAACAAATCTCTCGATGTTGAATGATGAAAACGAGCCTCCTCTATCAGACAGACCTGCTAGAGGCTTGAATGGTCAAGATGAAACTCAACAAGGTAGGGACTTGCTTCCTGCATCAGTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGTCCTGCTAGTTTTAGGTTAAATACACAACCTTCTGGTCTTTCTGATAACTTACAAGAGAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTGCTTGTGATAATTTTGGAGTAGGGTCAGGAAGCCTTTCCCATCCTCGAACTCTACCTGAAAACGAAAGCAGTGAGATTAGACAATCTGACAGGCGGACTGGATCTAGAGAACCGGTTGAGCGGAATTTTCGTTTTAGTCGGACACTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGGAGATCATCATTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCATAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGGGTTTGGCATCTGAAGATAATGTTATGAGCTCACCAACAACATCAGGTTTTCAAGCTTCTAGTCTATCCAGTTCCATTTTCAGCACCCAAGATTTTGAAGTGGATACTACCCGACCTAGAGAAGCTAGATATCATGATTTGCTGGAACACAGATCAAATTTCCTTGAACGAAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAGCATAGAACCGGTCATTGTACTTGTCGTATCAACAATCGTGACACAAATATAAATGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTACCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTCATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGAGGAAGGAGATAGCATGAGAGTCTTGCCTTGCCATCATGAGTTTCACACCACATGTGTCGACAAATGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTCGAGGAGACATATGCAGCAGATCTGATGCGTTGTCAGACGATGTCAAGTGA 1764 44.61 MGSSGSKSSSSSLPAPETLSCSGRIRRGRSKGRRVFQSACLGTSSGSHHSDNDDNDSESENKKNAHDYSSTNQTAQALDQMKVEGYRRVKAEESVEMPCISSNATLNGWDQAGVAVTAPRAGSTSARVSSLQSLNTSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDENEPPLSDRPARGLNGQDETQQGRDLLPASVASETHTQCYGDSPASFRLNTQPSGLSDNLQENQSVSSTHDMAGACDNFGVGSGSLSHPRTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRGLASEDNVMSSPTTSGFQASSLSSSIFSTQDFEVDTTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFHSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICSRSDALSDDVK* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4790432 4794552 + CsaV3_4G007070.1 Csa04g00707 526317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00707 587 ProSiteProfiles Zinc finger RING-type profile. 530 572 IPR001841 -
Csa04g00707 587 SUPERFAMILY RING/U-box 518 578 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 161 180 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 1 79 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 161 200 - -
Csa04g00707 587 SMART ring_2 530 571 IPR001841 -
Csa04g00707 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 577 IPR013083 -
Csa04g00707 587 MobiDBLite consensus disorder prediction 1 18 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 212 251 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 320 339 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 273 292 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 49 65 - -
Csa04g00707 587 CDD mRING-H2-C3H2C2D_ZSWM2 529 572 - -
Csa04g00707 587 Pfam Ring finger domain 529 572 IPR001841 -
Csa04g00707 587 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 579 - -
Csa04g00707 587 MobiDBLite consensus disorder prediction 212 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01837 Csa-Chr1:15478206 Csa04g00707 Csa-Chr4:4790432 2.15E-47 dispersed
Csa02g02534 Csa-Chr2:22248090 Csa04g00707 Csa-Chr4:4790432 1.12E-11 dispersed
Csa04g00707 Csa-Chr4:4790432 Csa02g00400 Csa-Chr2:2774605 2.20E-12 dispersed
Csa04g00707 Csa-Chr4:4790432 Csa06g02802 Csa-Chr6:24445951 1.17E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00707 - - csv:101213468 1077.39