Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00712 ATGGGAAAACACCGTTTTGGCTATGCCTTAAGCCTCTCCATCGTTGTCTCACTAGCACTCATTGCCTTTGTCTCGTGTGTAGCTGCAGAATTGCACAGAACAAAGACGAAAGACCTCAAGTTGGATGGGAAGTTGTGCTATTTGCCTGAAAGTCAAGCATTTGGATATGGGGTTGCAGCTTTGGCCTGTTTGGTTATGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTATCAATTCAAGAGAGAAGAAGAGAAGTGAACAACCTCCTAAAAGACCAAATTTAGCCACATTTTTTCTTGTTGTTTCATGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCACGGCGTCGAGTATGAGCAGACAGCAGCCGTACGCGACGGGATGGTTGGGCGGAGAGTGCTACTTGGTGAAAAGCGGTGTATACGTCGCCGCAGCAATTCTAATCCTCATCTCGATATGCTCAACTGTAGGCTCCGCCGTAACAGTTCGAATCAACGAATCCAGAAAATCTACCACACTTCCAAAATGA 543 45.67 MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAALACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4824506 4826296 + CsaV3_4G007120.1 Csa04g00712 526322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00712 180 PANTHER OS07G0462200 PROTEIN-RELATED 7 168 - -
Csa04g00712 180 PANTHER PROTEIN MODIFYING WALL LIGNIN-1 7 168 - -
Csa04g00712 180 Pfam Protein of unknown function (DUF1218) 60 157 IPR009606 -
Csa04g00712 180 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00712 - - - csv:105435192 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00712 Csa-Chr4:4824506 Csa05g02639 Csa-Chr5:27459567 4.56E-07 dispersed
Csa04g00712 Csa-Chr4:4824506 Csa05g00527 Csa-Chr5:3376558 3.32E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g951 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00540 Cpe06g00598 . . . . . . . . . . . . . . . Csa04g00712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002779 1 2 0 1 1 0 3 2 1 2 2 2 3 1 2 3 1 2 2 1 1 2 2 2 2 1 2 3 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00712 Csa_Chr04 FPKM 323.125916 317.191071 51.463867 53.028118 65.264977 69.194946 68.455345 52.433998 55.217258 52.41011