Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00714 ATGTACGTCTTCGTCTCCCTCCTAGCCTTCTTCTTCCTTCTTTTCTTCCATTATCTTTTCAAATTCTCTGCTCCCTCTCGCCGGAAACTTCCCCTTCCCCCTGGTTCCATGGGTTGGCCCTATTTGGGTGAGACCCTCCAACTCTACTCTCAAGATCCCAATGTCTTCTTCGCTTCCAAAAAGAAGAGATATGGTCCAATTTTTAAGTCACATATATTGGGTTATCCTTGTGTGATGCTTTCTAGTCCTGAAGCTGTTAAGTTTGTATTGGTGACTAAAGCTCATCTCTTTAAGCCTACATTTCCAGCTAGTAAAGAGAGGATGTTGGGAAAAAATGCTATCTTTTTTCATCAAGGTGATTACCATGCCAAATTGAGACGTCTTGTTCTTCGAACTTTCATGCCTGAGGCGATTCGGAACATCGTTCCGAGTATCGAATCCATTGCTAAAAACACCGTTCAATCATGGGATGGACAATTGATTAATACCTTTCAAGAAATGAAGATGTTCGCATTCGAGGTTTCGTTACTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCGAAGACCTCAAGCGATGCTACTACATTCTTGAAAATGGCTACAATTCGATGCCGATTAACCTCCCCGGAACACTCTTCCACAAGGCCATGAAAGCAAGGAAAGAGCTAGCAGAAATACTAAACAAAATCCTCTCGACAAGAAGGGAAACGAAGCGGGAGTACGACGACCTCCTTGGATCTTTCATGGGCGAAAAAGAAGGCCTCACCGACAAACAAATCGCCGATAACGTCATAGGTCTCATCTTCGCTGCCCGCGACACCACCGCGAGTGTTCTAACATGGATCGTGAAATACCTAGGAGAGAACCCAAGTATTCTTCAAGCTGTAACAGCTGAACAAGAATCAATAGTGAAATCAAAAGAAAATGGAGATGACAATCTCACCTGGGCTGACACCAAAAATATGCCAATAACTTCAAGAGTAATTCAAGAAACTCTAAGAGTGGCTTCAGTTCTATCGTTTACTTTTAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTAATTCCAAAAGGATGGAAAGTTTTGCCTTTATTCAGAAACATTCATCACAGCCCAGAAATTTTCCCTCAACCTGAAAAATTTGATCCATCAAGATTTGAGGTTTCTCAGAAACCCAATACATACATGCCATTTGGCAATGGGACCCACTCTTGTCCAGGAAATGAATTAGCCAAGCTGGAAATGTTGGTTCTACTCCATCATTTAACCACTAAATTTAGGTGGAATGTAGTTGGTGAACAAGAAGGGATTCAATATGGTCCTTTTGCACTTCCTCTCAATGGCCTTCCAATTAGAATCTCTCTCAAGAAGTAA 1383 41.58 MYVFVSLLAFFFLLFFHYLFKFSAPSRRKLPLPPGSMGWPYLGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMLSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILENGYNSMPINLPGTLFHKAMKARKELAEILNKILSTRRETKREYDDLLGSFMGEKEGLTDKQIADNVIGLIFAARDTTASVLTWIVKYLGENPSILQAVTAEQESIVKSKENGDDNLTWADTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPQPEKFDPSRFEVSQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKFRWNVVGEQEGIQYGPFALPLNGLPIRISLKK* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4840262 4842948 - CsaV3_4G007140.1 Csa04g00714 526324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00714 460 PRINTS P450 superfamily signature 271 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS P450 superfamily signature 328 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS P450 superfamily signature 399 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS P450 superfamily signature 408 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PANTHER CYTOCHROME P450 26 10 457 - -
Csa04g00714 460 PANTHER ABSCISIC ACID 8'-HYDROXYLASE CYP707A2 10 457 - -
Csa04g00714 460 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 401 410 IPR017972 GO:0005506|GO:0016705
Csa04g00714 460 Gene3D Cytochrome P450 23 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 SUPERFAMILY Cytochrome P450 27 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 Coils Coil 217 237 - -
Csa04g00714 460 Pfam Cytochrome P450 33 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 260 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 280 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 327 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 367 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 398 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g00714 460 PRINTS E-class P450 group I signature 408 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02439 Csa-Chr1:21622706 Csa04g00714 Csa-Chr4:4840262 0 dispersed
Csa02g01959 Csa-Chr2:18394553 Csa04g00714 Csa-Chr4:4840262 5.95E-52 dispersed
Csa04g00714 Csa-Chr4:4840262 Csa07g00762 Csa-Chr7:5351643 0 dispersed
Csa04g00714 Csa-Chr4:4840262 Csa04g02406 Csa-Chr4:24307454 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00714 K09843 - csv:101212508 910.212