Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00716 ATGTCTGACGTAGCTCAAAACGACGCCGTCTTTGCCTATCCTTTTCATGTTGACTCTCATAATACTCAAGATAATAATAACAATAACAATAATAATCTTCACCAACTTCCTCTCCTTACGGTTACTCTCAAGTTTGAAGAAATTGTTTACAAAGTGAAGTTAGAAGGGAAAGGCGGCAGCTGCTGGGGTGGCGGTGGCGGCAGTTCATGGGGAGCTGCGGCCAACAGAGAGAAAACCATTCTCAATGGCTTAAGCGGCGTTGTATTCCCTGGCGAAATCCTCGCCATGCTCGGTCCTTCCGGCAGTGGAAAAACTACCCTTTTAACTGCCCTCGGTGGCCGTCTCTCCGGGAAACTCTCCGGAAAAATAACTTATAATGGTCAACCATTTTCCGGCGCCACCAAACGCCGAACTGGCTTCGTGGCGCAAGACGACGTTTTATACCCTCATTTAACGGTTGCCGAAACTCTACTCTTCACAGCTCTCCTCCGCCTTCCTTCCTCCCTAACCGCTGACGAAAAAGCCGAAGCGGTTGAGCGAGTTATCTCCGAGTTGGGCCTAACTCGCTGCCGCAATAGCATGATCGGCGGCCCACTTTTCCGAGGAATCTCTGGCGGAGAGAAAAAAAGAGTGAGCATCGGTCAAGAGATGTTGATCAACCCAAGCTTGCTTTTACTCGACGAACCCACCTCCGGTTTAGACTCGACCACTGCCATGAAAATCATCACCACCGTAAAACGTCTCGCCGCTGGTGGACGGACCATCGTGACGACCATTCATCAACCGTCAAGCCGGCTATACCATATGTTTGATAAGGTGGTTTTGTTGTCGGAAGGAAGCCCAATTTACTATGGTTCAGCTTCAAACGCCATGGATTATTTCTCCTCCATTGGATTCTCAACCTCCATTACCATTAATCCAGCTGATCTTCTTCTTGATCTTGCAAATGGAATCGCCCCTGATTCAAAGTATGCAAACGAGGGAGGAGAGAATATGGAACAAGAGCAAAAGAGTGTGAAGGAAGCCCTAATTTCAGCTTATGAGAAGAACATTTCCTCCACATTGAAGGCTGAGCTTTGTAGTTTGGATGCAAATAACTTCAACAACTATGCAAAAGATGCCTCAAAAAGAGAAAAGAGATCAAGAGAAGAGTGGTGCACAAGCTGGTGGTATCAATTCAGAGTGCTATTGCAAAGAGGGTTAAAGGAGAGAAGGTATGATGCCTTCAATAGGCTAAGGATTTTTCAAGTCATAAGTGTGGCCACTCTTGGTGGACTCCTTTGGTGGCACACTCCAACATCTCACATTGAGGACCGTATAGCATTGTTGTTCTTCTTCTCGGTCTTTTGGGGCTTCTACCCACTTTACAATGCAGTGTTCACCTTCCCACAAGAACGTACCATGCTAATCAAAGAGCGGTCTTCTGGCATGTATCGTCTCTCGTCTTACTTCCTCGCTCGAACTGTTGGTGACTTACCTTTAGAACTAGCACTCCCAACAGCCTTCGTCTTCATTATCTACTTCATGGGTGGTCTCGACCCCCACCCTACTACCTTCCTCCTCTCCCTCCTCATCGTCCTTTATAGCGTCCTTGTCTCACAAAGTCTTGGCTTGGCCTTTGGTGCCATTCTCATGGATGTCAAGCAAGCCACGACTCTCGCATCTGTCACCACCCTAGTCTTCCTCATTGCAGGCGGTTACTACATTCAACAGATCCCTCCATTCATTGTTTGGCTCAAGTATCTGAGCTATAGCTACTATTGTTACAAGCTTTTGTTGGGTGTGCAATACCACAACGGGGACGTTTATGAGTGTGGGAAAGGGGAGTTTTGTCAGGTGGTTGATTTTCCAGCTGTTAAATCAGTTGGGTTGGACCGACTTTGGGTTGATGTTTGTATAATGGCACTCATGTTGGTTGGCTACCGGCTCATCGCATACTTGGCTCTTCATAGGGTGAGATTGAGATGA 1968 47.15 MSDVAQNDAVFAYPFHVDSHNTQDNNNNNNNNLHQLPLLTVTLKFEEIVYKVKLEGKGGSCWGGGGGSSWGAAANREKTILNGLSGVVFPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGATKRRTGFVAQDDVLYPHLTVAETLLFTALLRLPSSLTADEKAEAVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAMKIITTVKRLAAGGRTIVTTIHQPSSRLYHMFDKVVLLSEGSPIYYGSASNAMDYFSSIGFSTSITINPADLLLDLANGIAPDSKYANEGGENMEQEQKSVKEALISAYEKNISSTLKAELCSLDANNFNNYAKDASKREKRSREEWCTSWWYQFRVLLQRGLKERRYDAFNRLRIFQVISVATLGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTVGDLPLELALPTAFVFIIYFMGGLDPHPTTFLLSLLIVLYSVLVSQSLGLAFGAILMDVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYHNGDVYECGKGEFCQVVDFPAVKSVGLDRLWVDVCIMALMLVGYRLIAYLALHRVRLR* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4902263 4906655 + CsaV3_4G007160.1 Csa04g00716 526326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00716 655 ProSitePatterns ABC transporters family signature. 203 217 IPR017871 GO:0005524
Csa04g00716 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 651 - -
Csa04g00716 655 Pfam ABC-2 type transporter 260 376 IPR043926 GO:0140359
Csa04g00716 655 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 38 651 - -
Csa04g00716 655 Pfam ABC transporter 81 231 IPR003439 GO:0005524
Csa04g00716 655 Pfam ABC-2 type transporter 391 597 IPR013525 GO:0016020|GO:0140359
Csa04g00716 655 Gene3D - 72 297 IPR027417 -
Csa04g00716 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 297 IPR027417 -
Csa04g00716 655 SMART AAA_5 90 280 IPR003593 -
Csa04g00716 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 303 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00716 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101219742 1227.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00983 Csa-Chr2:9390129 Csa04g00716 Csa-Chr4:4902263 0 dispersed
Csa03g00613 Csa-Chr3:5307037 Csa04g00716 Csa-Chr4:4902263 0 dispersed
Csa03g00614 Csa-Chr3:5316913 Csa04g00716 Csa-Chr4:4902263 0 dispersed
Csa03g03525 Csa-Chr3:31513436 Csa04g00716 Csa-Chr4:4902263 0 dispersed
Csa04g00716 Csa-Chr4:4902263 Csa07g01383 Csa-Chr7:13806255 0 dispersed
Csa06g02273 Csa-Chr6:20366329 Csa04g00716 Csa-Chr4:4902263 3.30E-58 dispersed
Csa06g02513 Csa-Chr6:22359171 Csa04g00716 Csa-Chr4:4902263 1.76E-73 dispersed
Csa06g02592 Csa-Chr6:22866067 Csa04g00716 Csa-Chr4:4902263 1.09E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00716 Csa_Chr04 FPKM 8.883428 9.516351 14.977913 16.548677 14.00093 12.863023 14.185542 18.156944 17.301085 16.626041