Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00726 ATGAATCATATTATGAACTATAATCATTTCCTCATCAATCTTACTCTATCTTCTCTTCTCCCTCTTCTTGCTTTCCTCTTCATGATCAATCCCACCCCTTCATTTCTTTCTAACCTTGTCGTCTTTGGCGATCCCGTCGACTGTCCTCATCATCATCACCCCCACCACCATCATGAAAACCCTGATGAAGATGATCAATCAGTGATAAGTTCCATTTGCGACAACTTTCCTACCGCTCTCGTTCCACTAGAAACCACCAACACTTCTATTTTTTGTGTTGATCAAAATAGTTGTTGCAACTTCACGACCATCCAAGCAGCGGTCGATGCAGTACCAAACTTGAGCATCAAGCGAAACATAATTTGGATAAATGCTGGAATTTACTATGAGAAGGTGATGGTACCAAAAACAAAAGCAAATGTGACATTTCAAGGACAAGGGTATACAACAACGGCTATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACTTTCTATAGTGCCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATTTAAGTTTCATGAATGTGGCGCCAATTCCAGCGCCGGGAGACGTCGGAGCACAGGGGGTGGCGATTAGAATCGGTGGAGACCAAGCGGCTTTTTGGAGCTGCGGATTCTTTGGCGCTCAAGACACTCTTCACGACGACCGTGGCCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATAGATTTCATCTTTGGCAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGGTTTCGATGGCGAATCCGGTTCCGCAAGGATCGAAGTTTGTGAATGGAGCGGTGACTGCCCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTTCTTTTGTAAATTGCAGTATCGGGGGGACTGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGTGTCGTCTTCGCTAACACTGTTATGACGGATATCATTGCGCCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCAGACAATTTTCTATGGAGAGTACAATTGCAGTGGAGCAGGAGCGAATATGAGCTCAAGGGCTCCCTATGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAATTTATCCTTCATTGATGCCGACCAATGGCTTCAACCCTATTCATTGTTTTAA 1185 46.16 MNHIMNYNHFLINLTLSSLLPLLAFLFMINPTPSFLSNLVVFGDPVDCPHHHHPHHHHENPDEDDQSVISSICDNFPTALVPLETTNTSIFCVDQNSCCNFTTIQAAVDAVPNLSIKRNIIWINAGIYYEKVMVPKTKANVTFQGQGYTTTAIVWNDTANSSHGTFYSASVQVFSSNFIAKNLSFMNVAPIPAPGDVGAQGVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLVSMANPVPQGSKFVNGAVTAHGRASADENSGFSFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAPEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPYVQRLNDTQVSSFLNLSFIDADQWLQPYSLF* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4940430 4944054 - CsaV3_4G007260.1 Csa04g00726 526336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00726 394 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Csa04g00726 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 50 392 - -
Csa04g00726 394 Pfam Pectinesterase 93 384 IPR000070 GO:0030599|GO:0042545
Csa04g00726 394 PANTHER PECTINESTERASE 8-RELATED 50 392 - -
Csa04g00726 394 Gene3D - 89 393 IPR012334 -
Csa04g00726 394 SUPERFAMILY Pectin lyase-like 90 391 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03332 Csa-Chr3:30254124 Csa04g00726 Csa-Chr4:4940430 5.67E-128 dispersed
Csa04g00726 Csa-Chr4:4940430 Csa07g00944 Csa-Chr7:8228368 8.71E-86 dispersed
Csa04g00726 Csa-Chr4:4940430 Csa02g02065 Csa-Chr2:18904116 1.63E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00726 - - csv:101220702 784.637