Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00740 ATGCTTCGTAGCTTAATCCCTCATTCCCCCATCAATTCCACTTCCAACAATTCTCCTTCCTCCATGAAGTCTAAACGCTCCGATCACCATCTCGATCCCGACTCCAACCCCTCCACCGCCGCCGACTCCTCCCCGGACCACCCTCCCTCCAAGCGCCTCAATTCCTGTCACGACCATGACCACGACCACGACCACGACCCTCCTCCTCCCCTCGACCCCACCGACTCCACCGGTTTGCGTTTGCTCGGCCTTCTCCTTCAATGCGCCGAGTGCGTTGCCATCGATAACCTCCAAGAGGCCAACGATCTCCTACCCGAAATCTCCGAGCTCTCCTCGCCTTTTGGAACCTCACCGGAGCGCGTCGGCGCCTACTTCGCCCACGCGCTTCAAGCTAGAGTCATAAGTTCCTGCTTAGGAACTTACTCGCCCTTAACCATTAGAACACTGAATCAAACTCAATCGCAGAGGATTTTCAACGCTCTTCAATCTTACAATTCCATCAGTCCGTTGATTAAGTTTTCTCACTTCACCGCTAATCAAGCCATCTTCCAAGCCTTAGACGGTGAAGATCGAGTCCACGTTATCGACCTCGACGTAATGCAAGGTCTCCAATGGCCTGGATTATTCCACATCCTCGCTTCTCGGCCAAAGAAAATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGATTTGCTCCAATCAACAGGACGAAGACTGGCGGATTTTGCAACATCTCTAGGCCTCCCCTTCGAATTCCATCCAGTGGAAGGCAAAATCGGGAACCTAACAAACCCGGGTCAACTGGAATTGAGATCTGGGGAAGCAGTAGTAGTTCATTGGATGCATCATTGCTTATACGACGTAACGGGAAGCGATATAGGTACGCTTCGATTACTTTCAACTCTAAAACCAAAAATAATCACGATTGTTGAACAAGATCTGAGCCATGGAGGTAGTTTTCTAGGAAGATTTGTAGAAGCTTTACATTATTATAGCGCGTTATTTGACGCGCTTGGTGATAGTTTAGGGATGGATAGTATTGAAAGACATGTGGTGGAACAGCAATTGTTTGGGTGTGAGATCAGGAACATTATCGCCGTTGGTGGACCCAAAAGAACTGGTGAAGTTAAGGTCGAAAGATGGGGAGATGAACTCAAACGCCTCGGCTTTAAACCCCTTTCTCTTCGTGGAAACCCCGCTGCTCAAGCCAGTTTACTTCTAGGGATGTTCCCTTGGAAAGGCTATACTCTTGTTGAAGAGAATGGGTGCCTTAAACTTGGATGGAAGGATTTATCTCTTCTTACAGCCTCAGCATGGCAGCCCACGTAA 1335 49.29 MLRSLIPHSPINSTSNNSPSSMKSKRSDHHLDPDSNPSTAADSSPDHPPSKRLNSCHDHDHDHDHDPPPPLDPTDSTGLRLLGLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSDLLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPGQLELRSGEAVVVHWMHHCLYDVTGSDIGTLRLLSTLKPKIITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLGMDSIERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRLGFKPLSLRGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPT* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5052044 5054439 - CsaV3_4G007400.1 Csa04g00740 526350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00740 444 MobiDBLite consensus disorder prediction 51 70 - -
Csa04g00740 444 MobiDBLite consensus disorder prediction 7 22 - -
Csa04g00740 444 MobiDBLite consensus disorder prediction 1 75 - -
Csa04g00740 444 Pfam GRAS domain family 83 442 IPR005202 -
Csa04g00740 444 MobiDBLite consensus disorder prediction 36 50 - -
Csa04g00740 444 ProSiteProfiles GRAS family profile. 72 442 IPR005202 -
Csa04g00740 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 442 IPR005202 -
Csa04g00740 444 PANTHER SCARECROW-LIKE PROTEIN 23 18 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00740 Csa-Chr4:5052044 Csa04g01154 Csa-Chr4:9874571 1.13E-161 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31523 PF03514 GRAS 1.40E-115 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00740 - - csv:101212169 852.432