Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00754 ATGGAGACGATGGCCACGACTGCGAAGACGAAGATGATGAAGTTGGTTTGGTTGATTGTAGGTTCAGTTATGGTGATTGTGATATCACAACGATTTTGGATGCCATCTTTGGAATTTAGTCATCTTTGGGGAAGTGTTGGCTTTACAAACAATAATCCAAGAAACAACGATAAATTCATCAATGGCCTTCTTCCTCCAGGCTTCGATCAAAAATCCTGCTTAAGCCGATACCAACTCAACCTCAACAGAAAACCCTCTCCCCACAAACCCTCTTTCCCTCTCCTTTCAAAGCTCCGTCGCTACGAGGCTCTCCACCGTCGTTGTGGCCCCAATTCCCCATCGTTCCGTCAAGCCCTTCTTCGTCTCTCCTCACCCACCAACTCCACAACCCCATCAGATCATGACTGCAAATACATTGTTATTCTTACTCGAGACGGTCTCGGCAATCGGATCCTCGCCATTCTCTCTGCCTTCCTTTACGCTCTAATCTCCAATCGTGTCATTCTAATCCATCCTCGCAATACCCTCGAAGATCTCTTCTGTGAGCCCTTTCTTGAATCCTCATGGCTTCTTCCCTCAGATTTCCCTCTCCAGAACAAATTTGGGTCATTCCGTCAGTCCTTCCCAGAGTCTTTTGGGAATATTCTGAGGAATGGGATGCGGAAGAAAACACTCGAAGATTCACGGCCTCCACCTTATTTGTATCTCCACCTCTCTCATGATGCCGATGATTACGATAAGCTCTTTTACTGTGATCGACAACAAAATCTTTTGAAGAAGGTTCCATGGTTGATTATGGAGACGAATAACTACCTGGTTCCGGGAATTTTTTTGGTTTCTTCTTTTAGACAAGAGCTTAACGAACTCTTTCCGGCGAAGGACACTGTGTTCCACCATCTTGGACGATACCTCTTCCACCCGACGAACGATGTGTGGGGGCTGATTTTGAGATCTTACAAGCCATATGTTGCCAGAGCGAATGAAATGGTGGGGATTCAGGTCCGAATTTTTGGATCGGAGTCCGGGTCGATTCAGGACCAAATGAATCAGATTCTAGCTTGTACACAGAAGAAGAAATTACTACCGGAGACCGAACCATCGTCGCCAGAGAAGACGAATTTCTCCACTTCTCAGAAAGTGAAAGTTGTGTTGGTGACGTCTCTCAACTCTCAATACTCTGAAACCTTGAAGGAGATGTATTGGGAGCATCCGACTGTCGACGGGGAGGTGGTGGCGGTGTACCAGCCAAGCCACGAGGGGGTTCAGAGCTCAGATAACAGGATACACAATCGGAAGGCACTGGCGGAAATGTACCTTCTGAGTTTGAGCGACGTGTTGGTGACGAGCGATTGGTCGACGTTTGGATATGTGGCACAGGGGCTGGCTGGAGTGAAGCCATGGATGCTTTACAAGGCAGAGAAAAAGGTATTTTGGGCGTTACAACAGTGGCTAAAGTACAAAACGAGGAACGAGACGGGTGAGGATTGGCCGTGCCGGGAAGCGGTGTCGATGGAGCCGTGTCTCCAAGTGCCGCCGGTGTGCGATTGCGATGAGATGAAAAGAATGGATGGAGGGAATGTTTTGCCTTATGTGATACACTGTGAAGATGCGAGCTGGGGCCTCAAATTAGGTTGA 1635 47.89 METMATTAKTKMMKLVWLIVGSVMVIVISQRFWMPSLEFSHLWGSVGFTNNNPRNNDKFINGLLPPGFDQKSCLSRYQLNLNRKPSPHKPSFPLLSKLRRYEALHRRCGPNSPSFRQALLRLSSPTNSTTPSDHDCKYIVILTRDGLGNRILAILSAFLYALISNRVILIHPRNTLEDLFCEPFLESSWLLPSDFPLQNKFGSFRQSFPESFGNILRNGMRKKTLEDSRPPPYLYLHLSHDADDYDKLFYCDRQQNLLKKVPWLIMETNNYLVPGIFLVSSFRQELNELFPAKDTVFHHLGRYLFHPTNDVWGLILRSYKPYVARANEMVGIQVRIFGSESGSIQDQMNQILACTQKKKLLPETEPSSPEKTNFSTSQKVKVVLVTSLNSQYSETLKEMYWEHPTVDGEVVAVYQPSHEGVQSSDNRIHNRKALAEMYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKAEKKVFWALQQWLKYKTRNETGEDWPCREAVSMEPCLQVPPVCDCDEMKRMDGGNVLPYVIHCEDASWGLKLG* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5166215 5168823 + CsaV3_4G007540.1 Csa04g00754 526364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00754 544 PANTHER FUCOSYLTRANSFERASE 2-RELATED 480 543 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 PANTHER FUCOSYLTRANSFERASE 2-RELATED 49 475 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 49 475 - -
Csa04g00754 544 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 480 543 - -
Csa04g00754 544 Pfam Xyloglucan fucosyltransferase 45 475 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 Pfam Xyloglucan fucosyltransferase 480 516 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 Gene3D - 134 184 - -
Csa04g00754 544 Gene3D - 318 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00754 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101222105 1114.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00565 Csa-Chr1:3648040 Csa04g00754 Csa-Chr4:5166215 2.63E-178 dispersed
Csa04g00754 Csa-Chr4:5166215 Csa05g02478 Csa-Chr5:26514398 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 7.4e-200 693.7
Csa01g00565 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.2 4.9e-188 654.4
Csa04g00754 . 48 543 Xyloglucan Fucosyltransferase1 AT2G03220 51.2 1.7e-148 523.1
Csa05g02478 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.9e-183 638.6
Csa01g00565 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 2.9e-167 585.5
Csa05g02478 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 5.7e-149 524.6
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 5.5e-144 508.1
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 4.0e-147 518.5
Csa01g00565 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.3 7.4e-141 497.7
Csa05g02478 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 2.0e-154 542.7
Csa01g00565 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.3e-150 529.3
Csa05g02478 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.1e-163 571.2
Csa01g00565 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 6.9e-160 560.8
Csa05g02478 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.5e-137 486.5
Csa01g00565 . 101 582 Xyloglucan Fucosyltransferase1 AT1G14110 50.7 6.2e-131 464.5
Csa05g02478 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 2.1e-153 539.3
Csa01g00565 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 1.3e-145 513.5
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.5e-188 656.0
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 2.3e-184 642.1
Csa07g00757 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.4 1.3e-190 662.9
Csa03g01850 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 3.7e-182 634.8
Csa06g00471 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 70.1 1.1e-168 589.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00754 Csa_Chr04 FPKM 40.498993 40.983345 39.049156 41.926525 69.798698 70.301979 70.551697 39.892506 47.109386 48.267109