Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00754 ATGGAGACGATGGCCACGACTGCGAAGACGAAGATGATGAAGTTGGTTTGGTTGATTGTAGGTTCAGTTATGGTGATTGTGATATCACAACGATTTTGGATGCCATCTTTGGAATTTAGTCATCTTTGGGGAAGTGTTGGCTTTACAAACAATAATCCAAGAAACAACGATAAATTCATCAATGGCCTTCTTCCTCCAGGCTTCGATCAAAAATCCTGCTTAAGCCGATACCAACTCAACCTCAACAGAAAACCCTCTCCCCACAAACCCTCTTTCCCTCTCCTTTCAAAGCTCCGTCGCTACGAGGCTCTCCACCGTCGTTGTGGCCCCAATTCCCCATCGTTCCGTCAAGCCCTTCTTCGTCTCTCCTCACCCACCAACTCCACAACCCCATCAGATCATGACTGCAAATACATTGTTATTCTTACTCGAGACGGTCTCGGCAATCGGATCCTCGCCATTCTCTCTGCCTTCCTTTACGCTCTAATCTCCAATCGTGTCATTCTAATCCATCCTCGCAATACCCTCGAAGATCTCTTCTGTGAGCCCTTTCTTGAATCCTCATGGCTTCTTCCCTCAGATTTCCCTCTCCAGAACAAATTTGGGTCATTCCGTCAGTCCTTCCCAGAGTCTTTTGGGAATATTCTGAGGAATGGGATGCGGAAGAAAACACTCGAAGATTCACGGCCTCCACCTTATTTGTATCTCCACCTCTCTCATGATGCCGATGATTACGATAAGCTCTTTTACTGTGATCGACAACAAAATCTTTTGAAGAAGGTTCCATGGTTGATTATGGAGACGAATAACTACCTGGTTCCGGGAATTTTTTTGGTTTCTTCTTTTAGACAAGAGCTTAACGAACTCTTTCCGGCGAAGGACACTGTGTTCCACCATCTTGGACGATACCTCTTCCACCCGACGAACGATGTGTGGGGGCTGATTTTGAGATCTTACAAGCCATATGTTGCCAGAGCGAATGAAATGGTGGGGATTCAGGTCCGAATTTTTGGATCGGAGTCCGGGTCGATTCAGGACCAAATGAATCAGATTCTAGCTTGTACACAGAAGAAGAAATTACTACCGGAGACCGAACCATCGTCGCCAGAGAAGACGAATTTCTCCACTTCTCAGAAAGTGAAAGTTGTGTTGGTGACGTCTCTCAACTCTCAATACTCTGAAACCTTGAAGGAGATGTATTGGGAGCATCCGACTGTCGACGGGGAGGTGGTGGCGGTGTACCAGCCAAGCCACGAGGGGGTTCAGAGCTCAGATAACAGGATACACAATCGGAAGGCACTGGCGGAAATGTACCTTCTGAGTTTGAGCGACGTGTTGGTGACGAGCGATTGGTCGACGTTTGGATATGTGGCACAGGGGCTGGCTGGAGTGAAGCCATGGATGCTTTACAAGGCAGAGAAAAAGGTATTTTGGGCGTTACAACAGTGGCTAAAGTACAAAACGAGGAACGAGACGGGTGAGGATTGGCCGTGCCGGGAAGCGGTGTCGATGGAGCCGTGTCTCCAAGTGCCGCCGGTGTGCGATTGCGATGAGATGAAAAGAATGGATGGAGGGAATGTTTTGCCTTATGTGATACACTGTGAAGATGCGAGCTGGGGCCTCAAATTAGGTTGA 1635 47.89 METMATTAKTKMMKLVWLIVGSVMVIVISQRFWMPSLEFSHLWGSVGFTNNNPRNNDKFINGLLPPGFDQKSCLSRYQLNLNRKPSPHKPSFPLLSKLRRYEALHRRCGPNSPSFRQALLRLSSPTNSTTPSDHDCKYIVILTRDGLGNRILAILSAFLYALISNRVILIHPRNTLEDLFCEPFLESSWLLPSDFPLQNKFGSFRQSFPESFGNILRNGMRKKTLEDSRPPPYLYLHLSHDADDYDKLFYCDRQQNLLKKVPWLIMETNNYLVPGIFLVSSFRQELNELFPAKDTVFHHLGRYLFHPTNDVWGLILRSYKPYVARANEMVGIQVRIFGSESGSIQDQMNQILACTQKKKLLPETEPSSPEKTNFSTSQKVKVVLVTSLNSQYSETLKEMYWEHPTVDGEVVAVYQPSHEGVQSSDNRIHNRKALAEMYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKAEKKVFWALQQWLKYKTRNETGEDWPCREAVSMEPCLQVPPVCDCDEMKRMDGGNVLPYVIHCEDASWGLKLG* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5166215 5168823 + CsaV3_4G007540.1 Csa04g00754 526364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00754 544 PANTHER FUCOSYLTRANSFERASE 2-RELATED 480 543 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 PANTHER FUCOSYLTRANSFERASE 2-RELATED 49 475 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 49 475 - -
Csa04g00754 544 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 480 543 - -
Csa04g00754 544 Pfam Xyloglucan fucosyltransferase 45 475 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 Pfam Xyloglucan fucosyltransferase 480 516 IPR004938 GO:0008107|GO:0016020|GO:0042546
Csa04g00754 544 Gene3D - 134 184 - -
Csa04g00754 544 Gene3D - 318 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00565 Csa-Chr1:3648040 Csa04g00754 Csa-Chr4:5166215 2.63E-178 dispersed
Csa04g00754 Csa-Chr4:5166215 Csa05g02478 Csa-Chr5:26514398 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00754 K13681 - csv:101222105 1114.75