Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00762 ATGACTTGCTTCCCTTTTTTGTTCAGCAAGAGGGTAAAAGGCCCAACAAGAAGTTCGGTCGACGAAGAAGATTTTTCGAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACCGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGCTTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTAAGATAGAACATGAAAATCTGGTTCAGCTTTATGGGTGCTGTGTGGACGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTTGGACGAGGTTACAGCAGCATCCAGTTTAATTGGCGAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATTATACATAGAGATATCAAAGCGAGCAACATTCTTCTCGATCACGATCTCTCTCCTAAAATTTCCGATTTTGGTCTTGCAAAACTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCGGAATACGCGATAAGAGGGCAGGTGACAAGAAAATCAGACATTTACAGTTTTGGAGTCTTGCTTGTGGAAATAGTCAGCGGAAGATGGAACACTAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAACAAGGAGAGCTCGTTCTCCTAGTTGATACGTCCTTAAATGGGGACTTCGATGCTGAGATGGCCTGTAAATATCTAAAGATTGGCCTACTTTGCACGCAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACCGGTGAGATGAGTGTCGAAGACAGAAAGATATCGAAACCGGGGCTGATTTCAGACTTCATGGATCTAAAAGTAAGGAATCCAGAGGAAAATAAAGGGAACAGAGAGGGGGTGTCTTCTGATAGTCTGTCCTCAGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACAACAGGAACCTTCACTGCACAATACGACAGGAATACTTTCTCATCTGCACTGTGA 1194 42.04 MTCFPFLFSKRVKGPTRSSVDEEDFSSMQNVKFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLKDGKLAAIKVLSAESRQGLREFLTEINVISKIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWRTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRWNTNTQLPIGEQYLLERTWNLYEQGELVLLVDTSLNGDFDAEMACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSVEDRKISKPGLISDFMDLKVRNPEENKGNREGVSSDSLSSGSNILGNSTMSSEASTVTTGTFTAQYDRNTFSSAL* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5235626 5239873 + CsaV3_4G007620.1 Csa04g00762 526372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00762 397 SUPERFAMILY Protein kinase-like (PK-like) 26 317 IPR011009 -
Csa04g00762 397 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 377 - -
Csa04g00762 397 MobiDBLite consensus disorder prediction 354 374 - -
Csa04g00762 397 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Csa04g00762 397 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Csa04g00762 397 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00762 397 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 377 - -
Csa04g00762 397 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Csa04g00762 397 Pfam Protein kinase domain 48 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00762 397 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00762 397 MobiDBLite consensus disorder prediction 344 374 - -
Csa04g00762 397 CDD STKc_IRAK 52 319 - -
Csa04g00762 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03082 Csa-Chr3:28958607 Csa04g00762 Csa-Chr4:5235626 1.33E-122 dispersed
Csa04g00762 Csa-Chr4:5235626 Csa06g02561 Csa-Chr6:22666172 6.73E-128 dispersed
Csa04g00762 Csa-Chr4:5235626 Csa04g00800 Csa-Chr4:5599656 7.66E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78126 PF00069 Pkinase 2.20E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00762 - - csv:101216433 780.015