Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00762 | ATGACTTGCTTCCCTTTTTTGTTCAGCAAGAGGGTAAAAGGCCCAACAAGAAGTTCGGTCGACGAAGAAGATTTTTCGAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACCGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGCTTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTAAGATAGAACATGAAAATCTGGTTCAGCTTTATGGGTGCTGTGTGGACGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTTGGACGAGGTTACAGCAGCATCCAGTTTAATTGGCGAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATTATACATAGAGATATCAAAGCGAGCAACATTCTTCTCGATCACGATCTCTCTCCTAAAATTTCCGATTTTGGTCTTGCAAAACTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCGGAATACGCGATAAGAGGGCAGGTGACAAGAAAATCAGACATTTACAGTTTTGGAGTCTTGCTTGTGGAAATAGTCAGCGGAAGATGGAACACTAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAACAAGGAGAGCTCGTTCTCCTAGTTGATACGTCCTTAAATGGGGACTTCGATGCTGAGATGGCCTGTAAATATCTAAAGATTGGCCTACTTTGCACGCAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACCGGTGAGATGAGTGTCGAAGACAGAAAGATATCGAAACCGGGGCTGATTTCAGACTTCATGGATCTAAAAGTAAGGAATCCAGAGGAAAATAAAGGGAACAGAGAGGGGGTGTCTTCTGATAGTCTGTCCTCAGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACAACAGGAACCTTCACTGCACAATACGACAGGAATACTTTCTCATCTGCACTGTGA | 1194 | 42.04 | MTCFPFLFSKRVKGPTRSSVDEEDFSSMQNVKFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLKDGKLAAIKVLSAESRQGLREFLTEINVISKIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWRTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRWNTNTQLPIGEQYLLERTWNLYEQGELVLLVDTSLNGDFDAEMACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSVEDRKISKPGLISDFMDLKVRNPEENKGNREGVSSDSLSSGSNILGNSTMSSEASTVTTGTFTAQYDRNTFSSAL* | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5235626 | 5239873 | + | CsaV3_4G007620.1 | Csa04g00762 | 526372 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00762 | 397 | SUPERFAMILY | Protein kinase-like (PK-like) | 26 | 317 | IPR011009 | - | |
Csa04g00762 | 397 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 2 | 377 | - | - | |
Csa04g00762 | 397 | MobiDBLite | consensus disorder prediction | 354 | 374 | - | - | |
Csa04g00762 | 397 | Gene3D | Transferase(Phosphotransferase) domain 1 | 122 | 331 | - | - | |
Csa04g00762 | 397 | ProSitePatterns | Protein kinases ATP-binding region signature. | 52 | 74 | IPR017441 | GO:0005524 | |
Csa04g00762 | 397 | ProSiteProfiles | Protein kinase domain profile. | 46 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00762 | 397 | PANTHER | SERINE/THREONINE-PROTEIN KINASE-RELATED | 2 | 377 | - | - | |
Csa04g00762 | 397 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 121 | - | - | |
Csa04g00762 | 397 | Pfam | Protein kinase domain | 48 | 249 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00762 | 397 | SMART | serkin_6 | 46 | 317 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00762 | 397 | MobiDBLite | consensus disorder prediction | 344 | 374 | - | - | |
Csa04g00762 | 397 | CDD | STKc_IRAK | 52 | 319 | - | - | |
Csa04g00762 | 397 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03082 | Csa-Chr3:28958607 | Csa04g00762 | Csa-Chr4:5235626 | 1.33E-122 | dispersed | |
Csa04g00762 | Csa-Chr4:5235626 | Csa06g02561 | Csa-Chr6:22666172 | 6.73E-128 | dispersed | |
Csa04g00762 | Csa-Chr4:5235626 | Csa04g00800 | Csa-Chr4:5599656 | 7.66E-172 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78126 | PF00069 | Pkinase | 2.20E-47 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00762 | - | - | csv:101216433 | 780.015 |