Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00768 ATGGAGGACGATTACTCCATCTTCCCTCCCGATTCAGATCTCGATTTCAGTTTTACTTCCACCACCACCGACCGCACCTTCACCACCTCCTCCAGCGCCCGCACCAGTCTTGCTCGCAGCAGTCTAACACTCAGCTTTAATGAATCTCGTCTCTCCGCCGCTGCAGCCGCCCTCAACCTCCGCCCTTACCACCGTTCCGACTCTCACTGGTCCGCCATCAGAGCCGCTACTACTCTCTCTTCCGACGGCCATCTCCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGCACCGGCAACCTGGGGCGTGTCTTCTTGTGCCATTTGAGAGACAACGATCATGCCAGTTTCGCCCTGAAAGTGGTGGATAAGGAAGCTCTCAGTAACAAGAAGCTTTTGCAGGTTCAAACGGAAGCCGAGATTCTGGCTTCTTTGGACCACCCCTTTCTCCCAACCCTCTACGCCCGTCTCGACGTCTCTCATTACACGTGCCTCCTTATCGACTATTGTCCTGCCGGTGACCTCCACTCCCTCCTCCGTAAGCAGCCCGGTAGCCGCTTCTCTGTTGCGGCGGCGAGATTCTTCGCGGCAGAGGTCCTGGTGGCGCTGGAGTACCTTCACGCGCTTGGGATCGTGTACCGTGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGATTTGTGTTTTAAGTCCGACGTGGTTCCCACTTTTCACACCTGGACTCGCCCGGGCCCACAGGCTACTGGCTCCTGCTTTGGGTGGAGGACCTCTCCAGAGTTCGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACGTCTGCCTTTTCCAAGTCTTGTGTAGGGACTCACGAGTACTTGGCGCCGGAGTTAGTGACCGGCGGTGGTCACGGTAACGGCGTGGATTGGTGGGCGTTTGGGGTGTTCGTTTATGAGCTTCTGCACGGGACGACGCCGTTTAAAGGAGTGAACAAGGAGGGTACGTTAAGGAACATTGCGTCGTCGGAGGGGGTGAAGTTCAGAGGAGGGGGGGAGGAAGAGGGGGGGATGGGGGAGGCGAGAGATCTGATAGAGAGGCTGTTGGTGAAAGATCCTGGGAGGCGGTTGGGTTGGGAGAAAGGAGCGACGGAGATTAAACGGCATCCGTTCTTCGAGGGTATAAAATGGCCGTTGATCAGAACGTATAGGGTGCCGGAGGTGTACGGGATGATGAGAAAGGGGAGAGCACAGGTGAGCCACGTGAGGGAGGTGACAGAACGCATACGGCGGCGGGGGTGGTGGAACTGGAGGAAAGTGATGAGGAAGCGGTTAATTAAAAATGGAAGCTGCAGTAAATCTCATAGCAATACCAATTATTATAGTTATAGCTCTAAAAAGAAGACGGGTTAA 1416 55.58 MEDDYSIFPPDSDLDFSFTSTTTDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAALNLRPYHRSDSHWSAIRAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLLQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGSRFSVAAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRPGPQATGSCFGWRTSPEFEEEIVGEFVAEPTSAFSKSCVGTHEYLAPELVTGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRGGGEEEGGMGEARDLIERLLVKDPGRRLGWEKGATEIKRHPFFEGIKWPLIRTYRVPEVYGMMRKGRAQVSHVREVTERIRRRGWWNWRKVMRKRLIKNGSCSKSHSNTNYYSYSSKKKTG* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5296189 5298697 + CsaV3_4G007680.1 Csa04g00768 526378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00768 471 Pfam Protein kinase domain 92 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00768 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Csa04g00768 471 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 10 423 - -
Csa04g00768 471 Gene3D Transferase(Phosphotransferase) domain 1 174 241 - -
Csa04g00768 471 CDD STKc_phototropin_like 88 409 - -
Csa04g00768 471 PANTHER FLIPPASE KINASE 1-RELATED 10 423 - -
Csa04g00768 471 SMART serkin_6 90 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00768 471 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Csa04g00768 471 Gene3D Phosphorylase Kinase; domain 1 414 425 - -
Csa04g00768 471 SUPERFAMILY Protein kinase-like (PK-like) 69 423 IPR011009 -
Csa04g00768 471 ProSiteProfiles Protein kinase domain profile. 90 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00768 471 Gene3D Transferase(Phosphotransferase) domain 1 286 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00768 Csa-Chr4:5296189 Csa03g03977 Csa-Chr3:34781972 3.47E-112 dispersed
Csa04g00768 Csa-Chr4:5296189 Csa01g01551 Csa-Chr1:11109475 4.43E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78127 PF00069 Pkinase 3.40E-52 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00768 - - csv:101217611 834.713