Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00770 ATGGCGGACCAAGTCAAGTTGTTGGATTTTTGGCCCAGCATGTTCGGGATGCGAGTCAGAGTAGCCCTTGCTCTCAAGTGCGTGCCCTACGAATATGTGGATGAAGATCTCACAAACAAGAGCCCTTTGCTTCTTCAAATGAACCCAATTCACAAGAAAATCCCTGTTCTTATTCATAATGGAAAGCCCATTTGTGAATCTTCCATAATCGTCCAGTATATTGATGAATTTTGGAAGGATAAAGCTCCTCTGTTTCCTACTCATCCTTATGACAGAGCTCAGGCCAGATTTTGGGTTGATTTCATCGATAAGAAGCTTTTTGATTGTGGGAGGAAAATTTGGGCTAGCAAAGGAGAGGAGCAAGAAGAAGGTAAAACGGAGGTAATAGGAATATTGAAGCAGCTTGAAGAAGTAATCGGGGAGAAGGCTTACTTTGGAGGTGAATGTTTGGGATTTGTAGACATAGTTTTGATTGGATATTACACTTGGTTTTATGCCTATGAGACCATTGGAAACTTCAGCATTGAGTCTGAGTGTCCAAAGATAATGAGTTGGGCAAAGAGATGCTTACAAAATGAGAGTGTTTCTGAGTCCCTACCTGACCCCAAAAAGGTTTGTGATTTTGTGCTTCAAATGAAGAAAAAGTATGGGCTTTGA 657 41.25 MADQVKLLDFWPSMFGMRVRVALALKCVPYEYVDEDLTNKSPLLLQMNPIHKKIPVLIHNGKPICESSIIVQYIDEFWKDKAPLFPTHPYDRAQARFWVDFIDKKLFDCGRKIWASKGEEQEEGKTEVIGILKQLEEVIGEKAYFGGECLGFVDIVLIGYYTWFYAYETIGNFSIESECPKIMSWAKRCLQNESVSESLPDPKKVCDFVLQMKKKYGL* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5309846 5311663 - CsaV3_4G007700.1 Csa04g00770 526380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00770 218 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Csa04g00770 218 Gene3D Glutaredoxin 1 87 - -
Csa04g00770 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 210 IPR045073 -
Csa04g00770 218 CDD GST_N_Tau 5 78 - -
Csa04g00770 218 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Csa04g00770 218 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
Csa04g00770 218 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Csa04g00770 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Csa04g00770 218 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Csa04g00770 218 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 210 - -
Csa04g00770 218 Pfam Glutathione S-transferase, C-terminal domain 115 191 IPR004046 -
Csa04g00770 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Csa04g00770 218 SFLD Main (cytGST) 2 216 - -
Csa04g00770 218 Gene3D - 88 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00770 Csa-Chr4:5309846 Csa05g01429 Csa-Chr5:15390580 7.38E-81 dispersed
Csa04g00770 Csa-Chr4:5309846 Csa04g00772 Csa-Chr4:5329810 4.38E-114 proximal
Csa04g00769 Csa-Chr4:5302051 Csa04g00770 Csa-Chr4:5309846 4.05E-69 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00770 K00799 - csv:101217848 458.373