Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00772 ATGGCAGATCAGGAAGTGAAGCTGTTGGATTTTTGGCCCAGCATGTTTGGTATGAGAGTTAGAATAGCTTTGGCACAGAAGGGTGTGGCTTATGAGTATGTTGAAGAAGATCTGAGAAACAAGAGCCCTTTGCTTCTTGAAATGAACCCAATTCATAAGAAAATCCCAGTTCTTATTCATAATGGAAAACCCATTTGTGAATCTTCCATTATTGTTGAGTATATCGATGAATTTTGGAATGACAAAGCTCCTCTCTTGCCTTCTCATCCTTATGACAGAGCTCAAGCCAGATTTTGGGTTGATTTCATTGATAAGAAGCTTTATGGAAGTGTGAGGAAGATATATGGTGGAAAAGGAGAGGAGCAAGAGGAAGGGAAGAAGGAGATGATGGAAATATTGAAGGAATTAGAAAAAGTGCTTGGAGAAAAGGATTATTTTGGAGGTGAATGCTTTGGAGTCTTAGACATAGCTTTGATTGGATTCTCAACTTGGTTCAGTGGTCTAGAGAGCATTGGAAATTTCAGCATTGAAAGTGAGTGTCCAAAGTTAATAAGTTGGGCGAAAAGATGTTTGCAAAGGGAGAGTGTTTCTAAATCCTTACCTGACTCCAAAAAGACTACTGAGTTTATTGCTGAACTCAGAAAAATGATTGTTGAGTAA 660 38.48 MADQEVKLLDFWPSMFGMRVRIALAQKGVAYEYVEEDLRNKSPLLLEMNPIHKKIPVLIHNGKPICESSIIVEYIDEFWNDKAPLLPSHPYDRAQARFWVDFIDKKLYGSVRKIYGGKGEEQEEGKKEMMEILKELEKVLGEKDYFGGECFGVLDIALIGFSTWFSGLESIGNFSIESECPKLISWAKRCLQRESVSKSLPDSKKTTEFIAELRKMIVE* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5329810 5336845 - CsaV3_4G007720.1 Csa04g00772 526382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00772 219 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Csa04g00772 219 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Csa04g00772 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 -
Csa04g00772 219 CDD GST_C_Tau 90 210 IPR045074 GO:0004364|GO:0006749
Csa04g00772 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Csa04g00772 219 Pfam Glutathione S-transferase, C-terminal domain 123 189 - -
Csa04g00772 219 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Csa04g00772 219 CDD GST_N_Tau 6 79 - -
Csa04g00772 219 Gene3D - 89 219 - -
Csa04g00772 219 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 211 - -
Csa04g00772 219 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Csa04g00772 219 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Csa04g00772 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Csa04g00772 219 Gene3D Glutaredoxin 1 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00769 Csa-Chr4:5302051 Csa04g00772 Csa-Chr4:5329810 3.22E-69 dispersed
Csa04g00772 Csa-Chr4:5329810 Csa05g01429 Csa-Chr5:15390580 3.79E-78 dispersed
Csa04g00770 Csa-Chr4:5309846 Csa04g00772 Csa-Chr4:5329810 4.38E-114 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00772 K00799 - csv:101218083 394.43