Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00797 ATGCCACAAGATCATCCAAAGAAGGAAGCCAAAGAAGTAAACTTTTTTACTGAATATGGGGATGCTAACAGATATAAGATTCTTGAAGTTGTTGGAAAGGGAAGTTATGGAGTTGTTTGTTCTGCTATTGACATGCAAACTGGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGACATCAAGCGTATTATGTTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTCATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTCTTTCTCTATCAAATGTTACGTGCATTGAAATTCATGCATACAGCGAATGTGTATCATAGAGATCTGAAGCCAAAGAATATATTAGCAAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGATACCCCAACTACTGTATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGTTGTGTGGATCGTTCTGTTCCAAGTACACTCCTGCTATAGATATTTGGAGTGTTGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTATTTCCGGGTAAAAGTGTTGCACATCAGTTGGATTTGATTACTGATCTTCTTGGGACCCCCTCAATGGAAACCATTGCAGGAGTTCGGAATGAAAAGGTCAGAAAATATTTGACAGAAATGAAAAAGAAATCTCCAGTGCCATTTTCACAAAGATTTCCCAAGGTGGATCCTACAGCCATCCGCTTATTGGAAAGACTATTAGCATTTAATCCAAAGGATCGACCATCTGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAAGGCCTTGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCGGAATTTGAGTTTGAGAGACGGAAATTAACAAAGGATGATGTTAGGGAATTGTTGTACAGAGAAATATTAGAATATCATCCTCAAATTCGTGACGATTATTTGAATGGAACTGAGACTACAAAGCTACACTATCCTAGTGTTACAGGTCATTTTAAAAGCCAATTCACCTTCCACAAGGAGAACAATGGTAAAAGCGCGCCTGTTTTACCTCTAGAACGGAAACACTTCTCACTGCCACGGTCCACTGTTTGCACAAATTTGGTTTCACCTGATCATGAACCCGTTCGGCGAAATCCCAAAGTTTGTAATAATAGTATGGGATTACCAGATAGAACATTTGGGAATCCATCAAAGGCTCATCATCCACCTAAAGTGCCTACTGGACGAGTTGCTGGATCTATTCTCCCATATGAGCACCGAAACATAAAAGATGTTTATTCAAAGCTAACGTCACAAATTAGAAGTTTGGATTTCTGA 1479 39.28 MPQDHPKKEAKEVNFFTEYGDANRYKILEVVGKGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSMETIAGVRNEKVRKYLTEMKKKSPVPFSQRFPKVDPTAIRLLERLLAFNPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRDDYLNGTETTKLHYPSVTGHFKSQFTFHKENNGKSAPVLPLERKHFSLPRSTVCTNLVSPDHEPVRRNPKVCNNSMGLPDRTFGNPSKAHHPPKVPTGRVAGSILPYEHRNIKDVYSKLTSQIRSLDF* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5580840 5585675 - CsaV3_4G007970.1 Csa04g00797 526407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00797 492 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Csa04g00797 492 MobiDBLite consensus disorder prediction 423 462 - -
Csa04g00797 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 440 - -
Csa04g00797 492 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00797 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 440 - -
Csa04g00797 492 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Csa04g00797 492 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa04g00797 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Csa04g00797 492 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00797 492 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00797 492 CDD STKc_TDY_MAPK 24 361 - -
Csa04g00797 492 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00797 Csa-Chr4:5580840 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa06g00186 Csa-Chr6:1245447 Csa04g00797 Csa-Chr4:5580840 4.31E-31 dispersed
Csa04g00797 Csa-Chr4:5580840 Csa06g02422 Csa-Chr6:21605091 0 transposed
Csa04g00797 Csa-Chr4:5580840 Csa06g01386 Csa-Chr6:11833552 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78128 PF00069 Pkinase 6.30E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00797 - K04371 csv:101213897 1008.82