Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00799 ATGGAATTGCCAATGAAGAGGCCTATTTCAGGTGATCAGAGAAGCCATTACAGAATAGAAGCAAGAAATCTTTGTTACAAAACAAGTGAGAGTTTTGATGGGTTGAATTGGGTGTGTGGTCGTGGTGGTGGGAGTTCAAAGCGAGGTCCAAAGTTCATTTTGAAGAATGTAAATTGTGAGGCCAGAGCTGGGGAGATTACAGCCATTGCTGGTCCTAGTGGGGCTGGCAAAACAACGTTGCTAGAGATTCTTGGAGGAAACATACCTTTGAAGAAGATTTCAGGCCAAGTGCTTGTAAATGACCAGCATATGCTTGAGAAAATGTTCCCAAGAATCTCAGGATACGTCACGCAGGACGATGCACTTTTCCCATTCCTCACAGTTGAAGAATCACTCATGTACAGTGCTCTACTGAGGCTTGCTGGTGGGAGAAAAGAGGCTGAATCTAGAGTGAGAAAGTTGATGAAAGATCTTGGGTTGGAACAAGTAGCAGGATCGAGGGTTGGAGGAGGATCAAACCGAGGCATTTCAGGAGGTGAAAGACGGAGAGTTTCGATTGGAGTTGAACTGGTTCATGACCCAGCTGTGATTTTCATTGATGAACCCACCTCAGGGTTGGATTCAGTCTCAGCACTTCATGTTATGTCAGTGCTTAGAAGAATGGTCGTTAGCCAAGGTAAGACTGTTCTTTTAACCATCCATCAACCCGGTTTTCGAATCCTTGAACTTTTCGATCGTCTAATTCTGCTTTCTAGTGGAGTTGTGATGCATAATGGATCACTGGATCATCTTGAGGAGATGCTTAAGCTTGCTAATCATCAGATCCCTCACCATGTAAATGTGCTTGAATTTGCCATTGATGTTGTGGACAGCTTGGCTATGCATGCTTCAGAAACTTTCAACAGACTCCATTACCTACAAAACAGGGTTGAGAATCAGACAATAAGAGTTCCACGCCTCAACAAGGACGAAGAACATATTTCTTACCAGAATTCTAGATCCAAGGAAGTTGTAATACTAGGACAAAGATTTTTCAAAAACACATTTAGGACCAAACAACTCTTTGCTACAAGAGTCATTCAAGCCTTGGTGGCTGGATTGGTACTTGGGACCATATTCTTCAAAACTGGGAATAATAATGGCAGAACTGCATTGCAAACCCGACTCGGGTTTTTTGCCTTTAGTCTCACGTTCTTGCTATCTTCAACAACAGAGGGTCTTCCAATCTTCTTGAGAGAGAGAATGATCCTGATGAGAGAGACATCAAGAGGTGCTTACAGAGTATCTTCCTATGTTCTAGCAAACACCCTTATCTTTCTCCCATTCCTTTTGATGGTCTCTCTTCTCTTTGCAGCCAGTGTTTATTGGTTGGTTGGCTTTAAAAATGAAGTTTCCGGGTTCTTTTACTTCTCTCTAGTCATTTGGATGGTCGTTCTAATGTCCAATTCTTTCGTAGCATGTTTCAGTGCTCTTGTTCCAAATTTTATTACAGGAAACTCAGTAATAGCAGGGCTAATGGGTTCTTTCTTTCTCTTTTCTGGTTACTTTATCTCGAAGAAGAACATCCCCAACTACTGGCTTTTTGTGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTCTTGATAAACGAGTATGGAGGAGAACAAGGGAAGGGAAGATGTATAGAGTCCAAAGAAGGAGTATGTACAACATATGGAGAAATGTTCTTAAGACAACAAGGACTAAAAGAGTCACAAAAATGGACCAATTTGGCAGTAATGTTGGGATTCATTGTTGGGTACAGAATCCTCTCTTTTGTGATCTTGTGGTACAGATGTAACAAAATCAGAAGCTAG 1842 41.64 MELPMKRPISGDQRSHYRIEARNLCYKTSESFDGLNWVCGRGGGSSKRGPKFILKNVNCEARAGEITAIAGPSGAGKTTLLEILGGNIPLKKISGQVLVNDQHMLEKMFPRISGYVTQDDALFPFLTVEESLMYSALLRLAGGRKEAESRVRKLMKDLGLEQVAGSRVGGGSNRGISGGERRRVSIGVELVHDPAVIFIDEPTSGLDSVSALHVMSVLRRMVVSQGKTVLLTIHQPGFRILELFDRLILLSSGVVMHNGSLDHLEEMLKLANHQIPHHVNVLEFAIDVVDSLAMHASETFNRLHYLQNRVENQTIRVPRLNKDEEHISYQNSRSKEVVILGQRFFKNTFRTKQLFATRVIQALVAGLVLGTIFFKTGNNNGRTALQTRLGFFAFSLTFLLSSTTEGLPIFLRERMILMRETSRGAYRVSSYVLANTLIFLPFLLMVSLLFAASVYWLVGFKNEVSGFFYFSLVIWMVVLMSNSFVACFSALVPNFITGNSVIAGLMGSFFLFSGYFISKKNIPNYWLFVHYLSLFKYPFECFLINEYGGEQGKGRCIESKEGVCTTYGEMFLRQQGLKESQKWTNLAVMLGFIVGYRILSFVILWYRCNKIRS* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5596724 5599174 + CsaV3_4G007990.1 Csa04g00799 526409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00799 613 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 605 - -
Csa04g00799 613 Pfam ABC transporter 54 204 IPR003439 GO:0005524
Csa04g00799 613 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 1 605 - -
Csa04g00799 613 SMART AAA_5 63 254 IPR003593 -
Csa04g00799 613 Gene3D - 42 277 IPR027417 -
Csa04g00799 613 Pfam ABC-2 type transporter 337 547 IPR013525 GO:0016020|GO:0140359
Csa04g00799 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 268 IPR027417 -
Csa04g00799 613 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524
Csa04g00799 613 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 277 IPR003439 GO:0005524
Csa04g00799 613 Pfam ABC-2 type transporter 234 319 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00799 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213419 1172.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01629 Csa-Chr2:15464609 Csa04g00799 Csa-Chr4:5596724 0 dispersed
Csa04g00799 Csa-Chr4:5596724 Csa06g02513 Csa-Chr6:22359171 1.49E-171 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g128 . . . . Bpe09g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1028 Cone15ag1013 . . . . . Blo10g00737 . Bda12g00821 . . . . . . . . . . . Cpe14g00374 . . . . . . . . . . . . . . . . Csa04g00799 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00799 Csa_Chr04 FPKM 10.323421 10.210627 10.563188 10.698564 11.225715 6.635824 9.689864 1.095787 1.969781 1.158928