Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00800 ATGACTTGTTTCTGTTTTGGTTCAAAAAGAAATAGTGATTCGTCGGTTGCACAAACAATTGCAGTAGTTGAAGAGATTTCAAATATTCCGAACGTTCGGTTGTACTCATACAAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGAAAACAAACTTGGACAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTTGGAAATGGAACTTTGGCTGCCATAAAGGTACTATCCATGGATTCAAGCCAAGGGACACGTGAATTTTTGGCAGAAATCAATGTGATCTCAGTTATAAATCATGATAACCTGGTTAAGTTGCATGGTTGTTGTGTGGAAGGGCAGCACCGGATCCTGGTCTATCCTTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTAGAGGACATAGGAATATTCAATTCAATTGGCAAACAAGGTGTAAAATATGCATTGGCGTTGCACAGGGGCTAGCGTTCCTTCATGAGGAAGTTCAGCCGCATGTTATACACAGAGACATCAAGGCAAGCAATATCCTGCTTGATAAGGATTTAAACCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTAACTTGACTCATGTTAGTACACGTGTTGCCGGGACAGTAGGTTATCTTGCACCTGAATTTGCCATACGGGGACAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTTTTGGAAATTGTTTGTGGGAGGTACAACATAAATAGACGGTTACCTGCTGAAGAACCGTATCTTCTTGAAATGGTGTGGGAGCATCATGAGAAAGGGCAATTGTTGGAATTGGTAGACATATCATTACGTCAAGACTTTGTGACGGAGCAGGCCTGTAGATACTTAAAAATCGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGGCCATCTATGGCTACTGTTGTCAAGATGCTAACGGGTGAAATCGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTATGCAAGAAAGGTGAGTCAACAGCTGAAGACTCAGGAAAGCCAATTGATTCAACTTCATCATCAAGACACATGGACACCTCATATGCTACGATAACCTTCGATTCAATATTTGATCGTAGTAACTGA 1161 40.74 MTCFCFGSKRNSDSSVAQTIAVVEEISNIPNVRLYSYKELRKATENFRSENKLGQGGFGSVYKGRLGNGTLAAIKVLSMDSSQGTREFLAEINVISVINHDNLVKLHGCCVEGQHRILVYPYLENSSLDKMLFGRGHRNIQFNWQTRCKICIGVAQGLAFLHEEVQPHVIHRDIKASNILLDKDLNPKISDFGLARLLPANLTHVSTRVAGTVGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRLPAEEPYLLEMVWEHHEKGQLLELVDISLRQDFVTEQACRYLKIGLLCTQDMPKLRPSMATVVKMLTGEIDISDQTISRPGMLSEFMLRKDVLCKKGESTAEDSGKPIDSTSSSRHMDTSYATITFDSIFDRSN* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5599656 5603668 - CsaV3_4G008000.1 Csa04g00800 526410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00800 386 CDD STKc_IRAK 53 320 - -
Csa04g00800 386 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Csa04g00800 386 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00800 386 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Csa04g00800 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Csa04g00800 386 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Csa04g00800 386 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00800 386 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 368 - -
Csa04g00800 386 Pfam Protein tyrosine and serine/threonine kinase 50 318 IPR001245 GO:0004672|GO:0006468
Csa04g00800 386 PANTHER SERINE/THREONINE-PROTEIN KINASE ISOFORM X1-RELATED 1 368 - -
Csa04g00800 386 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00800 Csa-Chr4:5599656 Csa05g01091 Csa-Chr5:11066223 1.72E-112 dispersed
Csa01g01213 Csa-Chr1:7524736 Csa04g00800 Csa-Chr4:5599656 2.74E-117 transposed
Csa01g02113 Csa-Chr1:18429084 Csa04g00800 Csa-Chr4:5599656 4.01E-10 transposed
Csa03g03082 Csa-Chr3:28958607 Csa04g00800 Csa-Chr4:5599656 3.07E-119 transposed
Csa04g00762 Csa-Chr4:5235626 Csa04g00800 Csa-Chr4:5599656 7.66E-172 transposed
Csa06g02561 Csa-Chr6:22666172 Csa04g00800 Csa-Chr4:5599656 2.17E-116 transposed
Csa04g00800 Csa-Chr4:5599656 Csa04g02258 Csa-Chr4:23201564 2.59E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78129 PF00069 Pkinase 5.70E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00800 - - csv:101213174 773.467