Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00801 ATGGCAATTTCCCATTTAGTACCTCATTTGCCTCTTCTACGCTTCCCTCTCACTGCGACAAAGCTCACTCCTCAACTCCATTCTTACAGACACCGCTTCTTCTCCATCCGTGCTTCCATGGCGTCTCCTCCTGCTCGCAAGGTTTTGGTTCCGGTTGCGAACGGCACCGAGCCGCTTGAGGCTGTCATCACCATTGACGTGCTTCGACGTGCTGGAGCTGATGTTACTGTTGCTTCCGTGGAGAATCATATTCGTGTTGATGCTGCTCATCAGATCAAGATTGTTGCGGATTCTCTCATTTCTGATTGTGCAGATACTGTTTTCGATCTCATCGCACTTCCTGGAGGTATGCCAGGTGCTACCAGTCTTAGAGATTGTGCAGTTTTGGAAAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCCATTTGTGCTTCACCTGCTGTGGTGCTTGGATCATGGGGTTTGCTGAAGGGTTTGAAAGCCACATGCTATCCATCGTTTATGGAGCAACTGGAATCTACTGCAACTGCTGTTGAATCCCGGGTACAGATTGATGGCCAAGTTGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCTGTTGCACTCGTCGATCAATTGTATGGGAAAGAAAAAGCCGATGAAGTTTCTGGACCTCTGTTGTTGCGTTCCAATCATGGTCATGAATATACCATAGCTGAGCAAAATCAAGTGAAGTGGACATTTGATGATGGCCCAAGGATTCTCGTACCTATTGCTAGTGGTACTGAGGAAATGGAGGCTGTTATGATCATTGATATTCTTCGGAGAGCTAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACACACTAGAGATTCTTGCATCACGAAAAGTTAAACTGGAGGCAGATTTACTTCTTGACGAAGCTGCTGAACAGTCATACGATCTAATTGTTTTGCCTGGAGGGCTTGGTGGCGCAGAAGCGTTTGCAAAATCTGAAAAACTGGTTAATTTGCTAAAAAAGCAGAGAGAATCAAACAAACCCTATGGAGCAATATGTGCATCCCCAGCTTTGGTCTTAGAACCTCACGGCTTGCTGAAGGATAAGAAAGCCACTGCTTTTCCTGCATTATGTGACAAACTGTCGGACAAAAGCGAGATTGATAACAGAGTGATGGTTGACGGAAATCTCATTACAAGCCGGGGACCTGGAACGACAATGGAGTTTTCTTTGGCGATTGTAGAGAAGCTTTTTGGAAGAGACACAGCAGTTCAGCTGGGAAAAACAATGGTCTTCATTCAGGATTAG 1305 46.13 MAISHLVPHLPLLRFPLTATKLTPQLHSYRHRFFSIRASMASPPARKVLVPVANGTEPLEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMPGATSLRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLESTATAVESRVQIDGQVVTSRGPGTTLEFAVALVDQLYGKEKADEVSGPLLLRSNHGHEYTIAEQNQVKWTFDDGPRILVPIASGTEEMEAVMIIDILRRAKGKVVVASVEDTLEILASRKVKLEADLLLDEAAEQSYDLIVLPGGLGGAEAFAKSEKLVNLLKKQRESNKPYGAICASPALVLEPHGLLKDKKATAFPALCDKLSDKSEIDNRVMVDGNLITSRGPGTTMEFSLAIVEKLFGRDTAVQLGKTMVFIQD* 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5607622 5613462 - CsaV3_4G008010.1 Csa04g00801 526411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00801 434 Gene3D - 40 240 IPR029062 -
Csa04g00801 434 Gene3D - 247 433 IPR029062 -
Csa04g00801 434 SUPERFAMILY Class I glutamine amidotransferase-like 252 431 IPR029062 -
Csa04g00801 434 Pfam DJ-1/PfpI family 252 414 IPR002818 -
Csa04g00801 434 Pfam DJ-1/PfpI family 46 210 IPR002818 -
Csa04g00801 434 TIGRFAM not_thiJ: DJ-1 family protein 47 222 IPR006287 -
Csa04g00801 434 TIGRFAM not_thiJ: DJ-1 family protein 252 425 IPR006287 -
Csa04g00801 434 Coils Coil 282 302 - -
Csa04g00801 434 CDD GATase1_DJ-1 48 212 - -
Csa04g00801 434 CDD GATase1_DJ-1 253 416 - -
Csa04g00801 434 PANTHER BNAA06G01020D PROTEIN 43 429 - -
Csa04g00801 434 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 43 429 - -
Csa04g00801 434 SUPERFAMILY Class I glutamine amidotransferase-like 46 227 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00801 K03152 thiJ; protein deglycase [EC:3.5.1.124] - csv:101212934 830.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00059 Csa-Chr4:320438 Csa04g00801 Csa-Chr4:5607622 8.87E-06 dispersed
Csa04g00801 Csa-Chr4:5607622 Csa07g00753 Csa-Chr7:5291622 3.61E-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00801 Csa_Chr04 FPKM 16.165833 18.117649 41.405678 35.316231 18.80817 12.418742 18.212532 7.269523 8.246542 9.27594