Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00802 ATGCCATTGTCAGATTATATAAATAAACATCAGCTTCTTCTGAGCTTCATCATCCATTCTTCTTCCAATTACAGAGAGACAGAGTTTCATTTAAACATGAGACCGCCATTGTTGACGCCTCTTCTGCTCTCTTTCTTCTTTTTCTTCTCCCTCTCTTTTGCTATTGTTCCTTCCAATGAGACTTTCAAGTTCGTCAATGAAGGCGATTTCGGCGATTTCGCCGTTGAGTATGATGGAACTTACAGACCCCTCAGCATATCCAACTCCCCATTTCAGCTCATGTTCTACAACACAACGCCAAATGCATATACACTCGCTCTTCGAATGGCCATTCTACGCTCTGAATCCGCCAAGCGTTGGGTGTGGGAAGCTAATCGCGGCCGTCCAGTTCGCGAAAATGCCACATTATCTCTCGGCTCCGACGGAAACCTAGTCCTTGCTGAAGCTGACGGCACCGTTGTATGGCAAACTAACACCGCCAACAAAGGCGTCGTCAAATTAGATCTGCTTCCTAATGGCAACATGGTGCTCCTCGACTCCAACGGTAAATTCGTTTGGCAGAGCTTCGATTCGCCGACGGATACTCTCCTAGTCGGCCAATCGCTCCGAATCGGCGGCGTAACGAAGCTAGTAAGCCGCGCATCGGAGAAATTGAACGTGAATGGACCTTACAGCTTTGTAATGGAACGAAAAGCCGTGTCTCTGTATTACAAAAGCCCTAACTCTCCAAAACCAATGCGCTACTTCGCCGGATCTTCGAATTGGTTCACAATCCAGAAAGGCTCCCTCGCAAGAGTCACTCTTCGAGCCGAGGTAGATCCAGATCAAGGATTTGCCACCGAGTTGACATTGAACTACGAAGTTGCCGGAACGGAGAACGGCGGACCAATTCTGTCACGGCCAAAGTACAACAGCACATTAACATTCCTCAGATTAGGAATAGACGGAAACCTCCGGCTGTTCACATACAACGACAAAGTGGACTGGAGCCCGTCGGAGATTACGTTCACATTGTTCGATAGGGAATTTAATACAGGGAACACGGAGAGCGAATGCCAGTGGCCGGAGCGATGCGGGCAGTTCGGGTTGTGTGAGGAGAACCAATGTGTGGCCTGCCCAACGGAGAAGGGGCTGTTGGGATGGAGCAAGACATGTATGGCGAAGAAGGTAAGTTCATGTGACCCCAAAAGCTTCCATTATTACAAAGTTGAAGGTGTGGATCATTTCTTGACAAAGTATAACAAAGGAGAAGGGCTTCGCCAAAAAGATTGCGAGAAAAAGTGTAATTTGGATTGTAAGTGTTTGGGGTATTTTTACCAAACCAAAGGCTCACTTTGTTGGGTTGCAAATGAGTTGAAGACGTTGATCAAAGTGGATAACTCCACTCATTTGGGGTTCATCAAAACACCCAATATGTAG 1419 47.15 MPLSDYINKHQLLLSFIIHSSSNYRETEFHLNMRPPLLTPLLLSFFFFFSLSFAIVPSNETFKFVNEGDFGDFAVEYDGTYRPLSISNSPFQLMFYNTTPNAYTLALRMAILRSESAKRWVWEANRGRPVRENATLSLGSDGNLVLAEADGTVVWQTNTANKGVVKLDLLPNGNMVLLDSNGKFVWQSFDSPTDTLLVGQSLRIGGVTKLVSRASEKLNVNGPYSFVMERKAVSLYYKSPNSPKPMRYFAGSSNWFTIQKGSLARVTLRAEVDPDQGFATELTLNYEVAGTENGGPILSRPKYNSTLTFLRLGIDGNLRLFTYNDKVDWSPSEITFTLFDREFNTGNTESECQWPERCGQFGLCEENQCVACPTEKGLLGWSKTCMAKKVSSCDPKSFHYYKVEGVDHFLTKYNKGEGLRQKDCEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVDNSTHLGFIKTPNM* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5619575 5626101 - CsaV3_4G008020.1 Csa04g00802 526412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00802 472 ProSiteProfiles Bulb-type lectin domain profile. 71 190 IPR001480 -
Csa04g00802 472 SUPERFAMILY alpha-D-mannose-specific plant lectins 100 239 IPR036426 -
Csa04g00802 472 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 39 471 - -
Csa04g00802 472 Pfam D-mannose binding lectin 121 210 IPR001480 -
Csa04g00802 472 SMART blect_4 75 192 IPR001480 -
Csa04g00802 472 PIRSF SLG 32 472 IPR035446 -
Csa04g00802 472 PANTHER - 39 471 - -
Csa04g00802 472 Gene3D - 80 191 IPR036426 -
Csa04g00802 472 CDD B_lectin 75 192 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00802 - - - cmo:103492955 913.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03017 Csa-Chr3:28638981 Csa04g00802 Csa-Chr4:5619575 6.65E-20 dispersed
Csa04g00802 Csa-Chr4:5619575 Csa04g02290 Csa-Chr4:23453902 3.27E-129 dispersed
Csa04g00802 Csa-Chr4:5619575 Csa03g04335 Csa-Chr3:37882559 5.73E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00802 Csa_Chr04 FPKM 1.472081 0.0 4.72251 4.488172 5.826121 6.128428 5.593318 0.942443 0.860133 0.646546