Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00806 ATGTCTCTTCGCCGATCCTTTCTCTCTCGGAGGTTCTCTTCCAAGTCTTCCTCTAGAGGAGATCTCAATGCTCTTCCTGGAATTCTTCCCCTCTCCTCCGACTTTGATCATTCCTCCCCTCTCTCTGGAGCTTCTCATCCTCAATCCTCTTGGTCTTCCATGCTTCCCGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTGAAGAACACGGTTGGCCCAATCGCCAGAACGTTGTTTCTTGTGCTTGTGTTTGTAAACGTTGGCGGGATATTACTAAAGAGGTCGCCAGGGCCACACCTCATTCCGGAAAAATTACTTTCCCTTCCTGTCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAATAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCCGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATCATATCCCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACAAATTTTACCATTTATGACAGCCAACCACCACATAATGGTGCAAAGCCATCAAACAGTAAATCAAGCCGCCGGTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCAGCAGGTAACTTTGAGGTTGGGCAAGTTTCTTACAAATTTAATCTCTTGAAATCAAGAGGCCCAAGGCGAATGATATGCTCTCTAAAATGCCCATTATCCGAAGACAATGGAAGCAACAAACCTTGTGAGAACTCGAAGATGAAGAAATCTGAGTTTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCACCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAGAACTTTCAACTTGTTGCTACTGTTGACCATACCCAGCCAGGAGGCAAAGGGGACGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATACGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACTAAGCTGGCGTGCGAATAG 1143 45.23 MSLRRSFLSRRFSSKSSSRGDLNALPGILPLSSDFDHSSPLSGASHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSNSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPLSEDNGSNKPCENSKMKKSEFLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHTQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5646770 5651059 + CsaV3_4G008060.1 Csa04g00806 526416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00806 380 Gene3D Tubby Protein; Chain A 107 380 IPR025659 -
Csa04g00806 380 Gene3D - 44 97 - -
Csa04g00806 380 Pfam F-box domain 51 95 IPR001810 GO:0005515
Csa04g00806 380 Pfam Tub family 112 375 IPR000007 -
Csa04g00806 380 SUPERFAMILY Tubby C-terminal domain-like 102 380 IPR025659 -
Csa04g00806 380 MobiDBLite consensus disorder prediction 200 220 - -
Csa04g00806 380 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 290 307 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Csa04g00806 380 PRINTS Tubby superfamily signature 358 380 IPR000007 -
Csa04g00806 380 ProSitePatterns Tub family signature 2. 365 380 IPR018066 -
Csa04g00806 380 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 380 - -
Csa04g00806 380 SUPERFAMILY F-box domain 48 94 IPR036047 GO:0005515
Csa04g00806 380 ProSitePatterns Tub family signature 1. 308 321 IPR018066 -
Csa04g00806 380 PANTHER TUBBY-RELATED 1 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00806 Csa-Chr4:5646770 Csa06g00522 Csa-Chr6:4410794 3.15E-124 dispersed
Csa04g00806 Csa-Chr4:5646770 Csa06g00572 Csa-Chr6:4906059 1.17E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31526 PF01167 Tub 8.90E-103 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00806 K19600 - csv:101211968 759.214