Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00810 ATGGCTGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTTTGATTGGGGACTCCGGCGTTGGAAAGTCCAATTTGCTCTCCAGATTTACTAAGAACGAGTTCAATCTCGAGTCCAAATCCACCATTGGTGTCGAGTTTGCTACCAGGACCTTGAACGTCGATGGCAAAGTTATCAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGCGCCATCACTAGTGCCTACTATCGTGGAGCGGTCGGTGCACTCCTTGTATATGATGTCACTCGCCATGCAACATTCGAGAACGTGGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATTGTCGTGATGCTTGTTGGAAACAAATCTGATCTTCGCCACCTTGTTGCTGTTCCGACGGAAGATGGTAAGTCATATGCGGAGAGGGAATCACTGTACTTCATCGAAACGTCTGCACTAGAAGCAGTCAATGTGGAGAAAGCATTTGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCCGTTGAAGGAGGAGAAAATGGATCTGCTTCCGCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAA 654 46.79 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSASAVPAQGEKINIKDESGLNRIKCCSS* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5671957 5674648 - CsaV3_4G008100.1 Csa04g00810 526420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00810 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Csa04g00810 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Csa04g00810 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Csa04g00810 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Csa04g00810 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Csa04g00810 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Csa04g00810 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Csa04g00810 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Csa04g00810 217 SMART ras_sub_4 11 177 - -
Csa04g00810 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Csa04g00810 217 SMART ran_sub_2 19 212 - -
Csa04g00810 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Csa04g00810 217 PANTHER DRAB5-RELATED 1 217 - -
Csa04g00810 217 PANTHER RAS-RELATED PROTEIN RABA1B 1 217 - -
Csa04g00810 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Csa04g00810 217 ProSiteProfiles small GTPase Ras family profile. 2 217 IPR001806 GO:0003924|GO:0005525
Csa04g00810 217 SMART rab_sub_5 14 177 - -
Csa04g00810 217 Gene3D - 6 215 IPR027417 -
Csa04g00810 217 CDD Rab11_like 11 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00810 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210988 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00810 Csa-Chr4:5671957 Csa06g03717 Csa-Chr6:29715196 1.88E-131 dispersed
Csa04g00810 Csa-Chr4:5671957 Csa01g02302 Csa-Chr1:20141058 2.24E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g98 Blo03g00702 Blo03g01562 . Bda09g00544 . Bpe08g00992 . . Cmo16g00469 Cmo04g00717 . . . Car09g00748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00443 . . Bma14g00271 . . Cmo09g00827 Cma04g00671 Cma16g00434 . . Cpe14g00367 Cpe01g00605 . . . . . . . . . . . . . . . Csa04g00810 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00810 Csa_Chr04 FPKM 12.565393 12.713314 9.785554 9.555368 8.801341 9.250069 9.067129 10.128448 9.348185 8.557136