Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00812 ATGGAAGCATTCCTTGCAAAATTGTTTGCTAATATTACAGCTTTGAAAGCTGCTTATGCTCAATTACAGTATGCACAATGTCCGTTTGATGTTGATGGGATCCAACTTGCGGATCGAAGTATCGTGTCGGAGTTGAAGAGTTTGTCTGAACTTAAACGATGTTTTGTTAAGAAGCAGTTTGATCTTCTTCTGCCCGAGACTGCAATGTTGTCAGCGGAACTTGTCGAGCAAAAGAGTGTTGTGAAACTGTATGAAATTTCAGTGAAGAAGCTGAACTCTCAGGTGAGACTTAAGGACTCTGAGATTATATTTCTCAAGGAGAAGTTGGAGGAAGCGAAGAGCAACACTAAGGTTCTAGAGAAGAGGATGAATCAAAGCGGACCACTCGAAAACCTTCAGCTTTCTGCTATAAACTCGAATCACATGGCTCGAGTCCTTCGTCATACGGTTAAAACCATTAGAAGTTTTGTCCAATTGTTGATTGATGAGATGAAATGCTGTGGTTGGGATATTGGTGAAGCTGCCTCTGCAATCGAACCACACATAGTTTACTTCAAAGAAGAGCATAAATGTTACGCTTTCGAGGCGTTCGTATGCCGAGTAATGTTTGAGGGCTTCCATTTCCCCAACTTTGCTCTTCCAAACGAGTCCCTACCACCCGACAAGAATCAGCAGAAGAAGCTATACTTGAGGAGGTTTGCCGAAACAAAATCATTAAAATCCAAAGAGCTCATTGGACATGGCCAGAAGCCCAATTCGACATTCGCCAAATTCTGCCGTGTCAAGTATTTGCAGCTAATACACCCTAAAATGGAGTCGTCGTTGTTCGGGAACTTGAACCAAAGAAGCCTAGTGAGTGCAGGTAAAATCCCAGAGACTGCATTCTTTGCCACATTTGCAGACATGGCTAGATGGGTGTGGCTTCTCCATTGCTTAGCCTTCTCCTTTGAACCGGAGGCATCAATCTTTCAAGTAAACAAAGGATGTCGATTCACCGACGTGTACATGAAAGCTGTAACGGAAGAAATCTTCTTCCTTTCCACACAACCCGACCTTGGAGTGGCATTCACCGTCGTACCCGGATTCTTCATTGGTAAAACTATAATACAATGCCAAGTTTACCTATCTCAATCACAACAACAACATCATCATCATCATAACCCTGTCCAGACAAAACAAAGGTAA 1185 42.78 MEAFLAKLFANITALKAAYAQLQYAQCPFDVDGIQLADRSIVSELKSLSELKRCFVKKQFDLLLPETAMLSAELVEQKSVVKLYEISVKKLNSQVRLKDSEIIFLKEKLEEAKSNTKVLEKRMNQSGPLENLQLSAINSNHMARVLRHTVKTIRSFVQLLIDEMKCCGWDIGEAASAIEPHIVYFKEEHKCYAFEAFVCRVMFEGFHFPNFALPNESLPPDKNQQKKLYLRRFAETKSLKSKELIGHGQKPNSTFAKFCRVKYLQLIHPKMESSLFGNLNQRSLVSAGKIPETAFFATFADMARWVWLLHCLAFSFEPEASIFQVNKGCRFTDVYMKAVTEEIFFLSTQPDLGVAFTVVPGFFIGKTIIQCQVYLSQSQQQHHHHHNPVQTKQR* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5683361 5686943 - CsaV3_4G008120.1 Csa04g00812 526422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00812 394 PANTHER OS01G0203800 PROTEIN 1 375 - -
Csa04g00812 394 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 375 IPR040225 GO:0009639|GO:0009959
Csa04g00812 394 Coils Coil 102 122 - -
Csa04g00812 394 Pfam Plant protein of unknown function (DUF641) 1 122 IPR006943 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00812 - - - csv:101210747 769.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g02272 Csa04g00812 CCT
Csa04g02272 Csa04g00812 ECH
Csa04g00812 Csa04g02272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00983 Csa-Chr3:7982061 Csa04g00812 Csa-Chr4:5683361 1.87E-99 dispersed
Csa04g00812 Csa-Chr4:5683361 Csa06g03721 Csa-Chr6:29740702 1.12E-122 dispersed
Csa06g01450 Csa-Chr6:12334564 Csa04g00812 Csa-Chr4:5683361 1.26E-51 transposed
Csa04g00812 Csa-Chr4:5683361 Csa04g02272 Csa-Chr4:23333240 4.75E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g94 . . . . Bpe09g00262 . . Bma13g00926 . Cmo04g00715 . . . Car09g00591 . Cpe06g00521 . . . . . . . . Cla11g01701 Cam11g1767 Cec11g1787 Cco11g1792 Clacu11g1926 Cmu11g1737 Cre11g2145 Cone6ag0199 Cone9ag0229 . . . Csa04g02272 Chy07g00013 . . Blo10g00729 . Bda12g00816 . . . . . . Cmo09g00649 Cma04g00669 . . . . Cpe01g00603 . . . . . . . . . . . . . . . Csa04g00812 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012596 0 3 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 3 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00812 Csa_Chr04 FPKM 63.721813 67.246834 42.885948 40.661579 67.798981 82.34671 63.381302 39.293365 38.770187 36.813499