Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00813 ATGAGGAACCCGTTCACATTTGTCATTTCTATAATATTTGTACTCTTTCTCACTCTTCAAATCCAAGTAAATGCTACTCCTGCAGGACCATTGATAAAACACTTGTCTTCTTTTGTCAAATGGACCAGGTCTTCATATAAATCCCTCCCAGCACCCCCATCAGATGGGAATGTCCTTCAGTTTGAGAATGGGTACTTGGTTGGGACTGTAGTGGAGGGCAATGAAATTGGAGTTCTTCCACATAAGATCCATGTCTCGAAGGACGGTGAACTTTTCGTTGTCGATTCAGTTAATAGCAATATTGTGAAGATCACTCCTCCGTTATCTAAATATACTAGAGCAAGATTGGTTGCTGGGTCATTTCAAAGCCACACTGGACATATTGATGGAAAACCTAACGATGCTCGCTTTAACCATCCAAGAGGTGTAACCGTGGATGATAAAGGAAATGTGTACGTAGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGCGTGACAACCATTGCAGGGGGCAAATCAAATGTTGTAGGCTACAGGGATGGACCGGGCGAAGATGCAAAATTCTCAAACGATTTTGATGTAATGTATGTCCGTTCTACTTGTTCCTTGTTGGTTATTGACCGTGGAAATGCTGCAATTCGTCAAATATCTCTAAATCAGGAGGATTGTGAATATCAAGACAGTTCGATTTCCAACAGTGATGTTCTTATGATCATCGGTGCTGTTTTGGCGGGATATGCAACATATATGATTCAGCGGGGCTTTGGAACCTCGAATGTCTCTCAGACAAATCCTCCTTTAGAAACTGAGTATAGAGAAAAACCATACAAGCCAGAGTCAAGCTCGGTCATGGACAGTGTAAAGGAAGACCCAGGATGGCCTTCATTTGGACGACTCATCATTGATCTTTCCAAACTGGCTCTTGAAGCTGTGGCTAGCATTTTCCTTTCTGTTGTTCCCGCTCGTTTCAGAGCTCGTAACACCAGAAAAGGTCTGACTCCGTTGAAAGATTCTCTCAGGATGCCTGAAGATGAACCGGAGCAACCAACAGTTCAAATGCTGCAGAGAACTCCTGTCCCTTTGACTGAAACAAGACAAGCTCATGTCAATGCAAGAGATCCCTTTCCTGAGCTGATGAAGCCTTCAAAGCTCAACTCAAGTAGTTTCAAAGATCCCTCGCTGCAAAGCAAGCACCGATCCTCAAAACGTCAAGAGCATGCTGATTTTTACAGATCAGGTGAGATTCCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAGAGACCTCGACACCGACAGCGTGAGAAAAGTGCAGAGATTAGTTATGGAGCTGTAGGATCTGAGCTAAAGCCAGCTGATTATGACAATCCAAAGTATGAACATTATAATATCAGGAATAAGTATGGACCAAATGGTTCCTTCGGATTCTAA 1443 43.17 MRNPFTFVISIIFVLFLTLQIQVNATPAGPLIKHLSSFVKWTRSSYKSLPAPPSDGNVLQFENGYLVGTVVEGNEIGVLPHKIHVSKDGELFVVDSVNSNIVKITPPLSKYTRARLVAGSFQSHTGHIDGKPNDARFNHPRGVTVDDKGNVYVADTLNLAIRKIGDAGVTTIAGGKSNVVGYRDGPGEDAKFSNDFDVMYVRSTCSLLVIDRGNAAIRQISLNQEDCEYQDSSISNSDVLMIIGAVLAGYATYMIQRGFGTSNVSQTNPPLETEYREKPYKPESSSVMDSVKEDPGWPSFGRLIIDLSKLALEAVASIFLSVVPARFRARNTRKGLTPLKDSLRMPEDEPEQPTVQMLQRTPVPLTETRQAHVNARDPFPELMKPSKLNSSSFKDPSLQSKHRSSKRQEHADFYRSGEIPPPYSRSKSQKERPRHRQREKSAEISYGAVGSELKPADYDNPKYEHYNIRNKYGPNGSFGF* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5698723 5703777 + CsaV3_4G008130.1 Csa04g00813 526423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00813 480 SUPERFAMILY NHL repeat 73 223 - -
Csa04g00813 480 MobiDBLite consensus disorder prediction 354 368 - -
Csa04g00813 480 PANTHER - 13 480 - -
Csa04g00813 480 MobiDBLite consensus disorder prediction 399 414 - -
Csa04g00813 480 MobiDBLite consensus disorder prediction 264 292 - -
Csa04g00813 480 Gene3D - 52 222 IPR011042 -
Csa04g00813 480 Pfam NHL repeat 137 161 IPR001258 GO:0005515
Csa04g00813 480 PANTHER NHL DOMAIN-CONTAINING PROTEIN 13 480 - -
Csa04g00813 480 MobiDBLite consensus disorder prediction 338 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00813 - - - csv:101210502 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00813 Csa-Chr4:5698723 Csa01g02674 Csa-Chr1:23762293 6.57E-07 dispersed
Csa03g03913 Csa-Chr3:34311732 Csa04g00813 Csa-Chr4:5698723 2.18E-74 transposed
Csa05g02909 Csa-Chr5:29591456 Csa04g00813 Csa-Chr4:5698723 1.53E-86 transposed
Csa04g00813 Csa-Chr4:5698723 Csa04g02274 Csa-Chr4:23354464 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g92 . . . Bda09g00547 . Bpe08g00989 . . . Cmo04g00713 . . . . . . Cpe02g00663 . . . . . . . . . . . . . . Cone6ag0200 Cone9ag0231 . . . . . . . . . . . . . . . . . Cma04g00666 . . . . Cpe01g00601 . . . . . . . . . . . . . . . Csa04g00813 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002564 1 4 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00813 Csa_Chr04 FPKM 3.537238 4.941437 3.939426 4.519504 9.377151 9.958154 7.834084 8.279108 7.532203 7.735533