Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00815 ATGACGTCGGGGACTCGGCTACCGACATGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCAGCAAAGATCTTCGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCTGATGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACACATCTCACCAACCCAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCTAGTCCAGCATCATCCTCATATATCGGTAATCCAAATGCTGATGGAAGTTCACTTATCCCCTGGCTCAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCATCTAAACTTCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCCAGAACGCCCCGACTCAAAGCTGACTGGGAAGATCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCCACAAACCCATTTGGTTTCAAAGAAGCAGCAATCACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGTTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGCATAGTGAAGCCATGGGAAGGAGAAATAATTCATGAGGAATGTGGTTCAGATGACTTAGAGCTCACTCTTGGCAACTCAAGGACCAGGTAA 978 49.39 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYTSHQPSPCASFNPSPGSSSFPSPASSSYIGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQIVPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAITGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGEIIHEECGSDDLELTLGNSRTR* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5720049 5724301 + CsaV3_4G008150.1 Csa04g00815 526425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00815 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Csa04g00815 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Csa04g00815 325 MobiDBLite consensus disorder prediction 1 20 - -
Csa04g00815 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 325 - -
Csa04g00815 325 MobiDBLite consensus disorder prediction 89 120 - -
Csa04g00815 325 MobiDBLite consensus disorder prediction 193 212 - -
Csa04g00815 325 MobiDBLite consensus disorder prediction 87 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02293 Csa-Chr1:20054584 Csa04g00815 Csa-Chr4:5720049 2.22E-127 dispersed
Csa04g00815 Csa-Chr4:5720049 Csa06g03212 Csa-Chr6:27211404 3.24E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31527 PF05687 BES1_N 6.60E-66 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00815 - - csv:101210002 605.905