Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00821 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACTGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACGGCAAATACTTATGTAACTGGTCATCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTCGAGCCTACTGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACGGAGATTAAAATTAGACCACCATCTGAAAGGGAATTTGCGATGCCTTCTCCTTCTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACGTTGCTTACTGGAAGCGGAGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAGCTTATTAGTCTGACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCCGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACGATGAATGCTTGGGTCAGGTTCCAGAAGCTTCCTGGGCTGTGCCTCAGATTCCCTCTCCACCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGTAATGGTACATTTTCAAAACGAAGAAGACAGTTCTAG 894 46.31 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTEIKIRPPSEREFAMPSPSELSRSLSVLGGSEDFMANRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECLGQVPEASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5753161 5758556 + CsaV3_4G008210.1 Csa04g00821 526431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00821 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa04g00821 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Csa04g00821 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Csa04g00821 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Csa04g00821 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Csa04g00821 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa04g00821 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Csa04g00821 297 Gene3D Classic Zinc Finger 1 92 - -
Csa04g00821 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Csa04g00821 297 CDD Bbox1_BBX-like 5 47 - -
Csa04g00821 297 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01300 Csa-Chr2:12644521 Csa04g00821 Csa-Chr4:5753161 3.11E-38 dispersed
Csa04g00581 Csa-Chr4:3819528 Csa04g00821 Csa-Chr4:5753161 6.93E-26 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa06g00679 Csa-Chr6:5555910 1.50E-45 dispersed
Csa07g00509 Csa-Chr7:3665194 Csa04g00821 Csa-Chr4:5753161 2.40E-12 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa02g02104 Csa-Chr2:19152113 1.87E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31528 PF00643 zf-B_box 3.60E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00821 - - csv:101209756 598.971