Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00821 | ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACTGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACGGCAAATACTTATGTAACTGGTCATCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTCGAGCCTACTGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACGGAGATTAAAATTAGACCACCATCTGAAAGGGAATTTGCGATGCCTTCTCCTTCTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACGTTGCTTACTGGAAGCGGAGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAGCTTATTAGTCTGACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCCGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACGATGAATGCTTGGGTCAGGTTCCAGAAGCTTCCTGGGCTGTGCCTCAGATTCCCTCTCCACCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGTAATGGTACATTTTCAAAACGAAGAAGACAGTTCTAG | 894 | 46.31 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTEIKIRPPSEREFAMPSPSELSRSLSVLGGSEDFMANRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECLGQVPEASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF* | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5753161 | 5758556 | + | CsaV3_4G008210.1 | Csa04g00821 | 526431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00821 | 297 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | Pfam | B-box zinc finger | 4 | 47 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Csa04g00821 | 297 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 296 | - | - | |
Csa04g00821 | 297 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Csa04g00821 | 297 | PANTHER | B-BOX ZINC FINGER PROTEIN 18 | 1 | 296 | - | - | |
Csa04g00821 | 297 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Csa04g00821 | 297 | CDD | Bbox1_BBX-like | 56 | 99 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01300 | Csa-Chr2:12644521 | Csa04g00821 | Csa-Chr4:5753161 | 3.11E-38 | dispersed | |
Csa04g00581 | Csa-Chr4:3819528 | Csa04g00821 | Csa-Chr4:5753161 | 6.93E-26 | dispersed | |
Csa04g00821 | Csa-Chr4:5753161 | Csa06g00679 | Csa-Chr6:5555910 | 1.50E-45 | dispersed | |
Csa07g00509 | Csa-Chr7:3665194 | Csa04g00821 | Csa-Chr4:5753161 | 2.40E-12 | dispersed | |
Csa04g00821 | Csa-Chr4:5753161 | Csa02g02104 | Csa-Chr2:19152113 | 1.87E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31528 | PF00643 | zf-B_box | 3.60E-07 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00821 | - | - | csv:101209756 | 598.971 |