Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00821 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACTGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACGGCAAATACTTATGTAACTGGTCATCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTCGAGCCTACTGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACGGAGATTAAAATTAGACCACCATCTGAAAGGGAATTTGCGATGCCTTCTCCTTCTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACGTTGCTTACTGGAAGCGGAGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAGCTTATTAGTCTGACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCCGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACGATGAATGCTTGGGTCAGGTTCCAGAAGCTTCCTGGGCTGTGCCTCAGATTCCCTCTCCACCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGTAATGGTACATTTTCAAAACGAAGAAGACAGTTCTAG 894 46.31 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTEIKIRPPSEREFAMPSPSELSRSLSVLGGSEDFMANRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECLGQVPEASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5753161 5758556 + CsaV3_4G008210.1 Csa04g00821 526431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00821 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa04g00821 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Csa04g00821 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Csa04g00821 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Csa04g00821 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Csa04g00821 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa04g00821 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Csa04g00821 297 Gene3D Classic Zinc Finger 1 92 - -
Csa04g00821 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Csa04g00821 297 CDD Bbox1_BBX-like 5 47 - -
Csa04g00821 297 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00821 - - - csv:101209756 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01300 Csa-Chr2:12644521 Csa04g00821 Csa-Chr4:5753161 3.11E-38 dispersed
Csa04g00581 Csa-Chr4:3819528 Csa04g00821 Csa-Chr4:5753161 6.93E-26 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa06g00679 Csa-Chr6:5555910 1.50E-45 dispersed
Csa07g00509 Csa-Chr7:3665194 Csa04g00821 Csa-Chr4:5753161 2.40E-12 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa02g02104 Csa-Chr2:19152113 1.87E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02445 . 6 338 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 1.4e-42 170.6
Csa02g02445 . 1 338 C2C2-CO-like Transcription Factor Family AT5G24930 61.0 8.2e-83 304.3
Csa01g02115 CCT 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.2e-57 220.7
Csa01g02115 CCT 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.2 4.3e-68 255.4
Csa02g02445 . 2 338 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.0e-53 206.1
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-90 328.9
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 3.5e-89 325.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa07g00027 CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 53.7 3.5e-48 189.1
Csa02g01300 CCT,ECH 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.2e-45 178.3
Csa04g00821 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 1.4e-78 290.0
Csa04g00581 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 60.5 2.6e-55 211.8
Csa06g03304 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Csa04g00581 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.0e-57 218.4
Csa06g03304 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Csa07g00027 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 54.8 3.8e-52 201.8
Csa02g02104 . 1 220 C2C2-CO-like Transcription Factor Family AT4G39070 50.7 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31528 PF00643 zf-B_box 3.60E-07 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00821 Csa_Chr04 FPKM 2.622872 0.0 8.554375 6.879442 8.024272 6.339762 7.480679 6.515666 5.999471 6.269951